ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

Properties

Avg. coverage: 1.00 Longest contig: 8.49 Kbp Bin length: 1.84 Mbp GC content: 68.98 %

Contigs count: 1001 Features count: 2511 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 BSCG 24 / 51 MC: 2 ASCG 8 / 38

Displaying items 701-750 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_35021_curated Species: Cellulomonas cellasea (50%)	2	1021 bp	69.64	1.00	82.57
scnpilot_solids1_trim150_scaffold_25288_curated Species: Microbacterium mangrovi (100%)	2	1488 bp	71.37	1.00	82.06
scnpilot_solids1_trim150_scaffold_13165_curated Species: Microbacterium testaceum (50%)	2	2368 bp	68.45	1.00	80.83
scnpilot_solids1_trim150_scaffold_25161_curated Species: Microbacterium mangrovi (100%)	2	1484 bp	72.98	1.00	93.19
scnpilot_solids1_trim150_scaffold_34162_curated Species: Arthrobacter nitrophenolicus (50%)	2	1191 bp	67.17	1.00	61.71
scnpilot_solids1_trim150_scaffold_29568_curated Species: Microbacterium sp. SUBG005 (50%)	2	1328 bp	71.31	1.00	99.40
scnpilot_solids1_trim150_scaffold_25282_curated Species: Microbacterium sp. SUBG005 (50%)	2	1479 bp	70.45	1.00	95.94
scnpilot_solids1_trim150_scaffold_26582_curated Species: Microbacterium testaceum (50%)	2	1435 bp	71.08	1.00	89.27
scnpilot_solids1_trim150_scaffold_28317_curated Species: Microbacterium oxydans (50%)	2	1098 bp	70.49	1.00	89.89
scnpilot_solids1_trim150_scaffold_26916_curated Species: Clavibacter michiganensis (50%)	2	1368 bp	70.25	1.00	99.78
scnpilot_solids1_trim150_scaffold_15453_curated Species: Arthrobacter sp. PAMC25486 (50%)	2	2111 bp	67.17	1.00	100.05
scnpilot_solids1_trim150_scaffold_29365_curated Species: Microbacterium azadirachtae (50%)	2	1125 bp	70.67	1.00	98.93
scnpilot_solids1_trim150_scaffold_42955_curated Species: Microbacterium mangrovi (50%)	2	1009 bp	71.66	1.00	100.20
scnpilot_solids1_trim150_scaffold_15568_curated Species: Arthrobacter crystallopoietes (50%)	2	2088 bp	71.50	1.00	76.15
scnpilot_solids1_trim150_scaffold_27470_curated Species: Microbacterium ginsengisoli (50%)	2	1305 bp	69.04	1.00	100.23
scnpilot_solids1_trim150_scaffold_37363_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1120 bp	68.13	1.00	99.64
scnpilot_solids1_trim150_scaffold_24672_curated Species: Arthrobacter aurescens (50%)	2	1513 bp	66.95	1.00	97.36
scnpilot_solids1_trim150_scaffold_21681_curated Species: Microbacterium azadirachtae (50%)	2	1551 bp	70.86	1.00	92.07
scnpilot_solids1_trim150_scaffold_39939_curated Species: Microbacterium mangrovi (50%)	2	1065 bp	72.21	1.00	79.72
scnpilot_solids1_trim150_scaffold_18650_curated Species: Leifsonia aquatica (50%)	2	1764 bp	70.24	1.00	94.90
scnpilot_solids1_trim150_scaffold_30343_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1304 bp	68.40	1.00	94.33
scnpilot_solids1_trim150_scaffold_34507_curated Species: Microbacterium sp. C448 (100%)	2	1187 bp	70.26	1.00	100.08
scnpilot_solids1_trim150_scaffold_43075_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1007 bp	65.34	1.00	87.29
scnpilot_solids1_trim150_scaffold_34016_curated Species: Microbacterium mangrovi (50%)	2	1028 bp	69.16	1.00	99.51
scnpilot_solids1_trim150_scaffold_29282_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1337 bp	69.26	1.00	100.08
scnpilot_solids1_trim150_scaffold_18156_curated Species: Microbacterium testaceum (50%)	2	1770 bp	69.89	1.00	84.92
scnpilot_solids1_trim150_scaffold_16086_curated Species: Microbacterium hominis (50%)	2	2050 bp	66.68	1.00	92.05
scnpilot_solids1_trim150_scaffold_26245_curated Species: Microbacterium sp. SUBG005 (50%)	2	1436 bp	69.29	1.00	100.07
scnpilot_solids1_trim150_scaffold_20061_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1692 bp	67.08	1.00	87.59
scnpilot_solids1_trim150_scaffold_29164_curated Species: Microbacterium hominis (50%)	2	1341 bp	70.54	1.00	89.49
scnpilot_solids1_trim150_scaffold_28057_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1379 bp	67.73	1.00	97.03
scnpilot_solids1_trim150_scaffold_78916_curated Species: Microbacterium sp. CH12i (50%)	2	1077 bp	73.07	1.00	93.31
scnpilot_solids1_trim150_scaffold_18318_curated Species: Beutenbergia cavernae (100%)	2	1869 bp	70.73	1.00	100.16
scnpilot_solids1_trim150_scaffold_20193_curated Species: Intrasporangium chromatireducens (100%)	2	1748 bp	66.76	1.00	78.26
scnpilot_solids1_trim150_scaffold_32719_curated Species: Microbacterium ginsengisoli (50%)	2	1233 bp	68.45	1.00	98.30
scnpilot_solids1_trim150_scaffold_17378_curated Species: Microbacterium sp. C448 (50%)	2	1934 bp	72.29	1.00	94.00
scnpilot_solids1_trim150_scaffold_39205_curated Species: Rathayibacter toxicus (50%)	2	1076 bp	68.40	1.00	92.84
scnpilot_solids1_trim150_scaffold_41911_curated Species: Microbacterium foliorum (50%)	2	1027 bp	67.87	1.00	68.06
scnpilot_solids1_trim150_scaffold_34629_curated Species: Microbacterium ginsengisoli (50%)	2	1084 bp	71.13	1.00	87.73
scnpilot_solids1_trim150_scaffold_31868_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1235 bp	69.23	1.00	93.04
scnpilot_solids1_trim150_scaffold_21751_curated Species: Microbacterium oxydans (50%)	2	1656 bp	70.41	1.00	87.14
scnpilot_solids1_trim150_scaffold_22012_curated Species: Microbacterium azadirachtae (50%)	2	1590 bp	71.32	1.00	89.81
scnpilot_solids1_trim150_scaffold_30587_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1297 bp	66.62	1.00	87.43
scnpilot_solids1_trim150_scaffold_38416_curated Species: Microbacterium sp. TS-1 (50%)	2	930 bp	71.40	1.00	95.48
scnpilot_solids1_trim150_scaffold_40013_curated Species: Microbacterium mangrovi (100%)	2	971 bp	68.18	1.00	88.67
scnpilot_solids1_trim150_scaffold_33399_curated Species: Microbacterium sp. TS-1 (50%)	2	1181 bp	67.06	1.00	96.27
scnpilot_solids1_trim150_scaffold_29350_curated Species: Microbacterium mangrovi (50%)	2	959 bp	72.37	1.00	98.85
scnpilot_solids1_trim150_scaffold_19830_curated Species: Microbacterium sp. SUBG005 (50%)	2	1733 bp	68.78	1.00	89.84
scnpilot_solids1_trim150_scaffold_16819_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1835 bp	68.61	1.00	95.97
scnpilot_solids1_trim150_scaffold_39105_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1083 bp	68.61	1.00	78.95

Displaying items 701-750 of 1001 in total

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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