ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

Properties

Avg. coverage: 1.00 Longest contig: 8.49 Kbp Bin length: 1.84 Mbp GC content: 68.98 %

Contigs count: 1001 Features count: 2511 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 BSCG 24 / 51 MC: 2 ASCG 8 / 38

Displaying items 751-800 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_39453_curated Species: Microbacterium azadirachtae (50%)	2	1075 bp	69.95	1.00	84.00
scnpilot_solids1_trim150_scaffold_15296_curated Species: Microbacterium azadirachtae (100%)	2	2061 bp	72.88	1.00	96.51
scnpilot_solids1_trim150_scaffold_41307_curated Species: Microbacterium sp. C448 (50%)	2	1039 bp	66.89	1.00	96.15
scnpilot_solids1_trim150_scaffold_39471_curated Species: Microbacterium sp. SA39 (100%)	2	1075 bp	69.95	1.00	97.67
scnpilot_solids1_trim150_scaffold_34697_curated Species: Arthrobacter sp. AK-YN10 (50%)	2	1103 bp	67.45	1.00	100.09
scnpilot_solids1_trim150_scaffold_18882_curated Species: Arthrobacter sp. AK-YN10 (50%)	2	1811 bp	67.15	1.00	88.63
scnpilot_solids1_trim150_scaffold_37033_curated Species: Arthrobacter siccitolerans (50%)	2	931 bp	68.42	1.00	87.97
scnpilot_solids1_trim150_scaffold_17061_curated Species: Microbacterium azadirachtae (50%)	2	1777 bp	72.88	1.00	75.30
scnpilot_solids1_trim150_scaffold_33271_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1199 bp	67.22	1.00	93.33
scnpilot_solids1_trim150_scaffold_40021_curated Species: Microbacterium sp. SA39 (50%)	2	980 bp	61.53	1.00	83.88
scnpilot_solids1_trim150_scaffold_39750_curated Species: Arthrobacter chlorophenolicus (100%)	2	1069 bp	68.19	1.00	100.19
scnpilot_solids1_trim150_scaffold_38979_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1069 bp	66.98	1.00	98.78
scnpilot_solids1_trim150_scaffold_43660_curated Species: Arthrobacter phenanthrenivorans (100%)	2	924 bp	62.34	1.00	82.47
scnpilot_solids1_trim150_scaffold_16563_curated Species: Arthrobacter siccitolerans (50%)	2	1859 bp	61.05	1.00	43.73
scnpilot_solids1_trim150_scaffold_41827_curated Species: Microbacterium testaceum (50%)	2	1029 bp	71.82	1.00	87.17
scnpilot_solids1_trim150_scaffold_23061_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1590 bp	68.24	1.00	82.83
scnpilot_solids1_trim150_scaffold_15961_curated Species: Intrasporangium chromatireducens (100%)	2	2001 bp	71.16	1.00	98.80
scnpilot_solids1_trim150_scaffold_36310_curated	2	1139 bp	63.39	1.00	58.74
scnpilot_solids1_trim150_scaffold_34174_curated Species: Microbacterium ginsengisoli (100%)	2	1195 bp	66.36	1.00	87.87
scnpilot_solids1_trim150_scaffold_28032_curated Species: Arthrobacter nitrophenolicus (50%)	2	1380 bp	67.90	1.00	77.17
scnpilot_solids1_trim150_scaffold_27122_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1414 bp	67.54	1.00	100.14
scnpilot_solids1_trim150_scaffold_6571_curated Species: Microbacterium sp. TS-1 (50%)	2	3713 bp	70.64	1.00	97.28
scnpilot_solids1_trim150_scaffold_25415_curated Species: Microbacterium sp. C448 (50%)	2	1406 bp	67.00	1.00	85.56
scnpilot_solids1_trim150_scaffold_26863_curated Species: Curtobacterium flaccumfaciens (50%)	2	1424 bp	69.38	1.00	100.70
scnpilot_solids1_trim150_scaffold_31045_curated Species: Arthrobacter chlorophenolicus (50%)	2	1282 bp	68.64	1.00	93.37
scnpilot_solids1_trim150_scaffold_11018_curated Species: Microbacterium sp. MRS-1 (50%)	2	2593 bp	72.08	1.00	79.71
scnpilot_solids1_trim150_scaffold_13381_curated Species: Leifsonia aquatica (50%)	2	2237 bp	71.70	1.00	100.05
scnpilot_solids1_trim150_scaffold_25107_curated Species: Microbacterium mangrovi (50%)	2	1431 bp	70.93	1.00	99.37
scnpilot_solids1_trim150_scaffold_12588_curated Species: Microbacterium mangrovi (50%)	2	2455 bp	68.02	1.00	73.81
scnpilot_solids1_trim150_scaffold_20795_curated Species: Microbacterium azadirachtae (50%)	2	1675 bp	64.90	1.00	60.90
scnpilot_solids1_trim150_scaffold_17795_curated Species: Arthrobacter nitrophenolicus (50%)	2	1777 bp	66.91	1.00	97.92
scnpilot_solids1_trim150_scaffold_33827_curated Species: Actinotalea fermentans (50%)	2	1204 bp	70.02	1.00	100.17
scnpilot_solids1_trim150_scaffold_20855_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1668 bp	67.93	1.00	99.82
scnpilot_solids1_trim150_scaffold_15686_curated Species: Microbacterium sp. TS-1 (50%)	2	2089 bp	66.06	1.00	82.58
scnpilot_solids1_trim150_scaffold_24756_curated Species: Arthrobacter sp. AK-YN10 (100%)	2	1510 bp	65.83	1.00	100.13
scnpilot_solids1_trim150_scaffold_32911_curated Species: Microbacterium testaceum (50%)	2	1125 bp	71.20	1.00	83.47
scnpilot_solids1_trim150_scaffold_21505_curated Species: Microbacterium oxydans (50%)	2	1657 bp	69.95	1.00	100.12
scnpilot_solids1_trim150_scaffold_33984_curated Species: Microbacterium mangrovi (50%)	2	1107 bp	61.07	1.00	70.73
scnpilot_solids1_trim150_scaffold_32390_curated Species: Microbacterium mangrovi (50%)	2	1195 bp	73.39	1.00	97.91
scnpilot_solids1_trim150_scaffold_16093_curated Species: Microbacterium azadirachtae (50%)	2	2049 bp	72.23	1.00	88.73
scnpilot_solids1_trim150_scaffold_38838_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1041 bp	67.34	1.00	93.08
scnpilot_solids1_trim150_scaffold_40996_curated Species: Microbacterium sp. C448 (100%)	2	980 bp	72.04	1.00	97.96
scnpilot_solids1_trim150_scaffold_32919_curated Species: Microbacterium ginsengisoli (50%)	2	1096 bp	69.62	1.00	83.76
scnpilot_solids1_trim150_scaffold_28620_curated Species: Intrasporangium chromatireducens (50%)	2	1359 bp	68.58	1.00	85.65
scnpilot_solids1_trim150_scaffold_34165_curated	2	1196 bp	53.43	1.00	32.11
scnpilot_solids1_trim150_scaffold_31832_curated Species: Leifsonia aquatica (50%)	2	956 bp	69.67	1.00	100.11
scnpilot_solids1_trim150_scaffold_20927_curated Species: Microbacterium sp. oral taxon 186 (50%)	2	1625 bp	67.26	1.00	100.06
scnpilot_solids1_trim150_scaffold_43676_curated Species: Arthrobacter phenanthrenivorans (100%)	2	870 bp	66.44	1.00	91.03
scnpilot_solids1_trim150_scaffold_28408_curated Species: Microbacterium sp. oral taxon 186 (50%)	2	1366 bp	71.16	1.00	100.15
scnpilot_solids1_trim150_scaffold_40043_curated Species: Arthrobacter siccitolerans (50%)	2	1033 bp	66.80	1.00	99.61

Displaying items 751-800 of 1001 in total

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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