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scnpilot_solids1_trim150_scaffold_3566_curated_10

Organism: solids_Xanthomonadales_2

partial RP 17 / 55 MC: 2 BSCG 18 / 51 MC: 2 ASCG 7 / 38
Location: 5599..6270

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 54.7
  • Coverage: 232.0
  • Bit_score: 224
  • Evalue 3.80e-56
RNA polymerase sigma54 factor n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A931B1 similarity UNIREF
DB: UNIREF100
  • Identity: 54.8
  • Coverage: 228.0
  • Bit_score: 230
  • Evalue 1.70e-57
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.1
  • Coverage: 227.0
  • Bit_score: 235
  • Evalue 7.40e-59

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Taxonomy

Lysobacter daejeonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 672
ATGAAGCAGCGCCTGTCCCCCGCGACGCAGCAGCACCTGGTCCTGACCCCGCAGCTCCGTCAGGCGATTCGCCTGTTGCAGCTTTCCGCCGCGGAGCTGGAGGCGGAGGTGGCCGAAGCAGTGGCGAGCAATCCACTGCTGGACTGGCAGGACGACGCGGCGCTGGTCGACCCACCAGTCACCGCCGGCGCGGTATCCGCATCGCCAGAACCCGCCTCCGGCGATATCGAACCCGCGCCGGATGAGCGCTGGGAGACCGACACCGAACAGTGGCAGGCCTCCGGGAGCGCGCCTGCGGGACGCGATGACGGCAGCGAGGTCGAGCAGCCCGATACCGAGGAGTCTTTGCAGGACCACCTGCTGTGGCAGCTGCATCTGGGCCACTTCAGTCCGCGCGACACCCGCATCGGCATCGCCCTGATCGATGCCATCGACGATGACGGCTACCTGCGCGAGGACCTGGCCACACTGGCTGCCAGCCTGCGCGCGGACATCGACGCCACGCCCGCGGAAATGCTGCCGGTGCTGCACCGCATCCAGCAGTTCGACCCGGTCGGCGTGGGCGCGCGCGACTTGGGCGAGTGCCTTTGCCTGCAACTGCAGGCGCTCCCGACGGACACACCCGCGCGCGCGCTGGCGCTGTCGATCGCGGCTGGCCCGCTGGCGCAGGTG
PROTEIN sequence
Length: 224
MKQRLSPATQQHLVLTPQLRQAIRLLQLSAAELEAEVAEAVASNPLLDWQDDAALVDPPVTAGAVSASPEPASGDIEPAPDERWETDTEQWQASGSAPAGRDDGSEVEQPDTEESLQDHLLWQLHLGHFSPRDTRIGIALIDAIDDDGYLREDLATLAASLRADIDATPAEMLPVLHRIQQFDPVGVGARDLGECLCLQLQALPTDTPARALALSIAAGPLAQV