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scnpilot_solids2_trim150_scaffold_23061_curated_4

Organism: solids_Rhodanobacter_2

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: comp(1654..2025)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXS1_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 123.0
  • Bit_score: 242
  • Evalue 1.80e-61
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 123.0
  • Bit_score: 242
  • Evalue 5.70e-62
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 123.0
  • Bit_score: 242
  • Evalue 2.60e-61

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 372
GACAAGATCCGCAAGGTGCTGAAGATCGCCAAGGAACCGATCTCGATGGAAACCCCGATCGGCGACGACGAGGATTCCCACCTGGGCGATTTCATCGAGGACGGCAACGCCAGCTCGCCGATCGACTCGGCGACGGAAACCGGCCTGATGGAAACCGTGCGCGATGTGCTCGCCGGGCTGACCCCGCGCGAGGCGAAGGTGCTGCGCATGCGCTTCGGCATCGACATGAACACCGACCACACCCTCGAGGAAGTCGGCAAGCAGTTCGACGTCACCCGCGAGCGGATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGCGCCACCCCAGCCGTTCGGAACAGCTGCGCTCGTTCCTCGACGTGGAGTAA
PROTEIN sequence
Length: 124
DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNASSPIDSATETGLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDVE*