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scnpilot_solids2_trim150_scaffold_240_curated_54

Organism: solids_Sphingobacteriales_3

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(62651..63550)

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYN2_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 50.8
  • Coverage: 299.0
  • Bit_score: 322
  • Evalue 5.70e-85
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 50.8
  • Coverage: 299.0
  • Bit_score: 322
  • Evalue 1.80e-85
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ACU04514.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.8
  • Coverage: 299.0
  • Bit_score: 322
  • Evalue 8.00e-85

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Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 900
ATGAAAGTCATCTTTGAACATCAATCCAATCCTTCCGGCGCCGGGCTTTTAGTAAAAGAATACGTACAAACCTATTTCACTTCTCCTTATCATTTTCATGACCTGTATGAACTGATTTGGATAAAGAAAAGTTATGGTAAACTCTACGCTGGTAAAAACATAATGAACTTTCAAGATGGAGATATCTACGCCTTTGGACCAGGGTTTGGGCATTGTTTTTATAATGAAAAATCGTTTATCGAAAAAAATGAGAAAGCACATGCCATTGCGATCTTCTTTAAAGAAGATTTTCTGGGCAAAGGTTTTTTTGACCATACGATGTTTACAGGTATACGAGACTTTTTTTTGAAGTCAACATTTGGGATAAAAATTGAAACGCCACCACCCGGCTTGCACGTGCTGTTTGATGACATTACCCGCCAAAGGGGCATGGAGGAATTAATTACGTTTCTTCAATTACTTAATCAAATTTCACAAACTTCATCTTTCTCTGTAAAAATGCTGAACGACACGCAATCCGCTATTAAATTAACCAATAAAGACTCGGCCCGGCTGGAACCTGTCATCAAATATGTAATGGAAAATTTCAGGGAAGACCTGGACAGCAAAACCGCCGCCAGGATGGTTTATTTAAATGATGCTGCCTTTTGCCGTTACTTTAAAAGCAGAACGGAGCAAACTTTTTCCCAGTTTGTGAATCATGTGCGCATCACGCATGCCACCAATTTGCTAATCACCGAAGAGTGGGATGTTCTGCGCATCTGTTACGAAAGCGGCTTTAATAACCTTTCTTATTTCAACCGCCAGTTCAGGGAAATCACCGGTCAAAGCCCGAAAGAATACAGGAAGTCATTTAATGGTAAAAATGAAAACCTTATCATGGATACTAAAGAGGATTAG
PROTEIN sequence
Length: 300
MKVIFEHQSNPSGAGLLVKEYVQTYFTSPYHFHDLYELIWIKKSYGKLYAGKNIMNFQDGDIYAFGPGFGHCFYNEKSFIEKNEKAHAIAIFFKEDFLGKGFFDHTMFTGIRDFFLKSTFGIKIETPPPGLHVLFDDITRQRGMEELITFLQLLNQISQTSSFSVKMLNDTQSAIKLTNKDSARLEPVIKYVMENFREDLDSKTAARMVYLNDAAFCRYFKSRTEQTFSQFVNHVRITHATNLLITEEWDVLRICYESGFNNLSYFNRQFREITGQSPKEYRKSFNGKNENLIMDTKED*