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QH_10_Halococcus_67_18

In projects: QH_10  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halococcus  →  Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Displaying items 1-50 of 256 in total
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contig # features sequence size GC content (%) Cov Coding Density (%) notes
qh_10_scaffold_9298
Species: Halococcus salifodinae (100%)
3 3001 bp 69.24 17.53 90.47
qh_10_scaffold_5920
Species: Halococcus saccharolyticus (66.67%)
3 4411 bp 64.86 20.47 92.16
qh_10_scaffold_13425
Species: Halococcus salifodinae (66.67%)
3 3340 bp 69.01 18.77 82.01
qh_10_scaffold_16552
Species: Halococcus saccharolyticus (66.67%)
3 3043 bp 65.53 16.69 70.00
qh_10_scaffold_6381
Order: Halobacteriales (66.67%)
3 3013 bp 59.58 13.74 79.95
qh_10_scaffold_5343
Genus: Halococcus (100%)
3 3342 bp 69.57 15.95 94.97
qh_10_scaffold_9944
Species: Halococcus salifodinae (66.67%)
3 3148 bp 70.11 15.47 98.35
qh_10_scaffold_13902
Species: Halococcus hamelinensis (66.67%)
3 3079 bp 67.33 15.78 93.15
qh_10_scaffold_4152
Class: Halobacteria (66.67%)
3 6007 bp 68.50 17.11 93.94
qh_10_scaffold_2857
Genus: Halococcus (66.67%)
3 4612 bp 66.24 19.88 82.74
qh_10_scaffold_6134
Species: Halococcus hamelinensis (50%)
4 3077 bp 67.01 18.10 86.68
qh_10_scaffold_2495
Species: Halococcus salifodinae (100%)
4 4920 bp 67.64 16.32 98.41
qh_10_scaffold_6140
Species: Halococcus saccharolyticus (50%)
4 4015 bp 67.87 16.91 65.08
qh_10_scaffold_10723
Species: Halococcus salifodinae (50%)
4 3994 bp 67.03 18.53 86.76
qh_10_scaffold_5717
Species: Halococcus saccharolyticus (50%)
4 3208 bp 65.43 16.30 90.90
qh_10_scaffold_7460
Species: Halococcus morrhuae (50%)
4 4270 bp 67.26 16.91 88.52
qh_10_scaffold_7699
Order: Halobacteriales (100%)
4 3961 bp 64.66 15.40 96.19
qh_10_scaffold_2098
Species: Halococcus saccharolyticus (50%)
4 5361 bp 68.05 16.73 83.94
qh_10_scaffold_5977
Order: Natrialbales (50%)
4 3129 bp 57.81 51.52 93.96
qh_10_scaffold_6210
Species: Halococcus saccharolyticus (75%)
4 3059 bp 65.84 17.13 74.44
qh_10_scaffold_9849
Species: Halococcus salifodinae (50%)
4 3034 bp 59.23 12.13 78.02
qh_10_scaffold_7048
Species: Halococcus salifodinae (50%)
4 4533 bp 69.09 17.41 89.48
qh_10_scaffold_8802
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
4 3820 bp 68.90 17.64 89.14
qh_10_scaffold_4912
Species: Halococcus saccharolyticus (75%)
4 3493 bp 67.08 19.73 85.20
qh_10_scaffold_5590
Order: Halobacteriales (50%)
4 3253 bp 61.14 21.03 86.87
qh_10_scaffold_11993
Species: Halococcus salifodinae (75%)
4 4274 bp 67.06 20.29 92.86
qh_10_scaffold_5614
Order: Halobacteriales (50%)
4 3657 bp 58.82 19.15 89.34
qh_10_scaffold_12891
Species: Halococcus saccharolyticus (50%)
4 3932 bp 68.01 18.18 99.34
qh_10_scaffold_1534
Species: Natronococcus amylolyticus (50%)
4 6823 bp 67.48 16.88 94.09
qh_10_scaffold_4438
Species: Halococcus salifodinae (50%)
4 3696 bp 66.29 18.94 87.50
qh_10_scaffold_3757
Species: Halococcus saccharolyticus (75%)
4 6756 bp 67.01 23.05 65.32
qh_10_scaffold_5448
Species: Halococcus saccharolyticus (80%)
5 7122 bp 67.21 18.13 79.61
qh_10_scaffold_8468
Species: Halococcus salifodinae (60%)
5 3824 bp 65.79 19.01 85.51
qh_10_scaffold_1907
Genus: Halococcus (100%)
5 5577 bp 69.43 19.67 93.71
qh_10_scaffold_12727
Species: Halococcus salifodinae (60%)
5 3287 bp 68.27 17.37 71.92
qh_10_scaffold_1977
Species: Halococcus salifodinae (60%)
5 5498 bp 68.84 20.39 94.73
qh_10_scaffold_4179
Species: Halococcus saccharolyticus (60%)
5 5116 bp 65.66 16.79 69.08
qh_10_scaffold_4835
Class: Halobacteria (60%)
5 3926 bp 65.74 16.89 81.46
qh_10_scaffold_5942
Species: Halococcus salifodinae (80%)
5 4456 bp 68.20 18.00 81.46
qh_10_scaffold_5031
Species: Halococcus saccharolyticus (80%)
5 5549 bp 69.22 18.99 82.45
qh_10_scaffold_7010
Genus: Halococcus (60%)
5 4766 bp 69.81 18.00 90.71
qh_10_scaffold_3906
Class: Halobacteria (80%)
5 4802 bp 67.93 19.95 90.71
qh_10_scaffold_9359
Species: Halococcus saccharolyticus (100%)
5 4133 bp 65.26 16.19 83.26
qh_10_scaffold_4348
Genus: Halococcus (80%)
5 7564 bp 69.57 21.06 87.85
qh_10_scaffold_14229
Order: Haloferacales (60%)
5 3065 bp 60.42 29.33 60.20
qh_10_scaffold_4226
Genus: Halococcus (80%)
5 3797 bp 66.66 19.75 84.15
qh_10_scaffold_6596
Species: Halococcus salifodinae (60%)
5 3443 bp 66.25 20.56 76.33
qh_10_scaffold_21488
Class: Halobacteria (80%)
5 3270 bp 68.72 17.49 73.85
qh_10_scaffold_6384
Domain: Archaea (60%)
5 5757 bp 64.32 18.66 75.61
qh_10_scaffold_3709
Order: Halobacteriales (60%)
5 4082 bp 65.36 15.66 87.24
Displaying items 1-50 of 256 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.