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ACD3_8_20

Organism: ACD3

near complete RP 47 / 55 MC: 12 BSCG 46 / 51 MC: 3 ASCG 0 / 38
Location: comp(19949..20512)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 39.0
  • Coverage: 182.0
  • Bit_score: 133
  • Evalue 5.00e-29
coiled-coil (db=Coil db_id=coil from=86 to=107 evalue=NA) iprscan interpro
DB: Coil
  • Identity: null
  • Coverage: null
  • Bit_score: null
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=15 to=180 evalue=6.8e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 6.80e-34

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Taxonomy

uncultured bacterium (gcode 4) → Bacteria

Sequences

DNA sequence
Length: 564
ATGGACGAAAAGCATATTGTTCAAAAGATAAAAGAGGATTCATTTAATTTTTGAGAGATAATCGATTTATATGAAGCTAAACTTTTGAGGTATGTACTCAGAATCTGAGATATGCCATATGAGGAGGCAGAAAATATCACACAAGATATATTTATAAAGGTGTATAAAAACATAAATTCTTATGATTCCACATTCCCCTTTTCAAGTTGGATATATAGGATAGCTCATAATGAAGTCATAGATTATTATAGAAAGAATGAGAAGGCAAAAAACAATATTTCGCTTAGTGATGAGGATTATAAGAATCTTATAGAAAATATTTCAGACAAAAAAACTCCTCACGATGATCTGGAAAAAACAAATATAAAGGAATGTGTCAGAAAATGAATAAATATGCTCAGCATAGATCAAAAAGAGATAATGATTCTTAAGTTCATTGAAGAAAAATGATACGAGGAAATAAGCGATATCCTGAAAATGCCAATCTGAACAGTATGAACAATAATAAATAGAGCAAAGAAACAACTGAAGGAAAATCTGGAGAAATTACATTGTAACTTTTAG
PROTEIN sequence
Length: 188
MDEKHIVQKIKEDSFNFGEIIDLYEAKLLRYVLRIGDMPYEEAENITQDIFIKVYKNINSYDSTFPFSSWIYRIAHNEVIDYYRKNEKAKNNISLSDEDYKNLIENISDKKTPHDDLEKTNIKECVRKGINMLSIDQKEIMILKFIEEKGYEEISDILKMPIGTVGTIINRAKKQLKENLEKLHCNF*