Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
ECF subfamily RNA polymerase sigma factor | similarity |
KEGG
DB: KEGG |
39.0 | 182.0 | 133 | 5.00e-29 | cte:CT0502 |
coiled-coil (db=Coil db_id=coil from=86 to=107 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | cte:CT0502 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=15 to=180 evalue=6.8e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 6.80e-34 | cte:CT0502 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=9 to=84 evalue=6.5e-17 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 6.50e-17 | cte:CT0502 |
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=4 to=88 evalue=2.7e-15) | iprscan |
interpro
DB: Gene3D |
null | null | null | 2.70e-15 | cte:CT0502 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=24 to=87 evalue=2.5e-13 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.50e-13 | cte:CT0502 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=112 to=182 evalue=4.4e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 4.40e-13 | cte:CT0502 |
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=124 to=176 evalue=1.5e-09 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.50e-09 | cte:CT0502 |
ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily alias=ACD3_C00008G00020,ACD3_1240.33365.67G0020,ACD3_1240.33365.67_20 id=49605 tax=ACD3 species=Chlorobaculum tepidum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi organism_group=BD1-5 organism_desc=BD1-5 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 390 | 3.40e-106 | cte:CT0502 |
Uncharacterized protein {ECO:0000313|EMBL:EKE28729.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;" |
UNIPROT
DB: UniProtKB |
96.8 | 187.0 | 353 | 1.50e-94 | K2GEQ5_9BACT |