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RifSed_csp2_16ft_3_scaffold_3176_7

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: comp(6904..7128)

Top 3 Functional Annotations

Value Algorithm Source
Small nuclear ribonucleoprotein, LSM family Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465H7_METBF similarity UNIREF
DB: UNIREF100
  • Identity: 74.3
  • Coverage: 74.0
  • Bit_score: 111
  • Evalue 2.90e-22
Small nuclear ribonucleoprotein {ECO:0000313|EMBL:KCZ70422.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.6
  • Coverage: 74.0
  • Bit_score: 142
  • Evalue 2.10e-31
Putative snRNP Sm-like protein, Archaeal similarity KEGG
DB: KEGG
  • Identity: 75.7
  • Coverage: 74.0
  • Bit_score: 111
  • Evalue 6.30e-23

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Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 225
TTGTTCCCAAATAAAAAAGTTCAGACACTTATAGGTTCGCGTATACAGGTTGAGATGAAAGGCGATAAGAACACACTTGAAGGCAGGCTGGAAAGCGTGGATGACAATCTGAATCTGCATCTTGTGGAGACGTTTGAGATCGCAAACGGAGTAAAGTCACGTTCTCTGGGTTCTGTGGTGCTGAGAGGGAATAACATAATTCTATTATGTCCGGTAGGGGAGTAG
PROTEIN sequence
Length: 75
LFPNKKVQTLIGSRIQVEMKGDKNTLEGRLESVDDNLNLHLVETFEIANGVKSRSLGSVVLRGNNIILLCPVGE*