ggKbase home page

RifSed_csp2_16ft_3_scaffold_3935_13

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: comp(9014..10249)

Top 3 Functional Annotations

Value Algorithm Source
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.9
  • Coverage: 411.0
  • Bit_score: 722
  • Evalue 2.80e-205
glycine hydroxymethyltransferase (EC:2.1.2.1) similarity KEGG
DB: KEGG
  • Identity: 68.2
  • Coverage: 406.0
  • Bit_score: 578
  • Evalue 1.30e-162
Serine hydroxymethyltransferase Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMS5_METZD similarity UNIREF
DB: UNIREF100
  • Identity: 68.2
  • Coverage: 406.0
  • Bit_score: 578
  • Evalue 4.60e-162

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1236
ATGCCATTAAAAACCATCGATCCGGAAATCTACGAAATAATGAAACGTGAAACTGAACGGCAGAGGAACAAACTGAACCTGATAGCTTCAGAAAATTACGCAAGCCGTGCTGTACTTCAGGCAATGGGATCTGTAATGACAAATAAATACGCCGAAGGTTACCCTGGAAAGAGGTATTATGGCGGATGCGAGTTTGTGGACGAGGCAGAGAACCTTGCGATAGAGAGGGCAAAAAACCTCTTTGGTGCCGAGCATGTCAATGTGCAGCCGCATTCAGGTTCTCAGGCTAACATGGCAGTATATCTTGCCGTGCTCAAATGCGGGGATACCATTATGAGCATGGATCTATCGCACGGGGGTCATCTCTCGCATGGGAGCCCTGTGAATTTCTCAGGTAAGCTGTTCAATATCATTCCTTATGGAGTTTCAATGGAGACAAAGACGATAGACTATGATTCGCTCATGGAGCTTGCTAAAAAGCATAAGCCCAGGCTCATCGTCTCAGGAGCGAGCGCATATCCCCGAGAGATTGATTTCAGCAGATTCAGGGAGATCGCTGATGAGGTTGATGCGCTGCTGCTTGCTGATATCGCGCATATAGCAGGGCTTGTTGTTGCAAAGATACACAGCGACCCTGTGCAGTATGCTGATTTTGTCACTTCGACAACGCATAAGACATTGAGGGGACCGCGCGGCGGGATGATAATGTGCAGATCAGAGTACGCAAAAGAGATAGACAGGACTGTATTCCCCGGAATACAGGGCGGCCCCCTCATGCACGTCATCGCTGCAAAAGCTGTGGCTTTCAAAGAAGCGATGAGCAGGGAATTCAACGATTACCAGAAGCAGATCGTCGTAAATGCAAAGAAAATGGCATCAGAGCTCATTTCGCGCGGGTACGAGATAGTCTCAGGAGGCACGGACAACCACCTGATGCTCGTTGACCTCACGCCTCTTGGCATCACAGGAAAGGATGCAGAGGCTAAACTCGGCGAGGCTGGAATAATAGTGAACAAGAACACCATTCCTTTCGAGACAAGGAGCCCGTTCATCACGAGCGGCATCCGCATCGGCACCCCTGCTGCCACAACACGCGGAATGAAAGCCAAAGAAATGGTAGTTATCGCGTCTGCTATTGATGAAACTCTCCGTAACATGGAAGATGCAGAAAAAATAAAGGAAGTAAAGAGAACCATCCTTGAGCTGTGCGGGCAGTTCTCGATCCCGTACGAGTGA
PROTEIN sequence
Length: 412
MPLKTIDPEIYEIMKRETERQRNKLNLIASENYASRAVLQAMGSVMTNKYAEGYPGKRYYGGCEFVDEAENLAIERAKNLFGAEHVNVQPHSGSQANMAVYLAVLKCGDTIMSMDLSHGGHLSHGSPVNFSGKLFNIIPYGVSMETKTIDYDSLMELAKKHKPRLIVSGASAYPREIDFSRFREIADEVDALLLADIAHIAGLVVAKIHSDPVQYADFVTSTTHKTLRGPRGGMIMCRSEYAKEIDRTVFPGIQGGPLMHVIAAKAVAFKEAMSREFNDYQKQIVVNAKKMASELISRGYEIVSGGTDNHLMLVDLTPLGITGKDAEAKLGEAGIIVNKNTIPFETRSPFITSGIRIGTPAATTRGMKAKEMVVIASAIDETLRNMEDAEKIKEVKRTILELCGQFSIPYE*