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RifSed_csp2_16ft_3_scaffold_4833_6

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: 3837..4832

Top 3 Functional Annotations

Value Algorithm Source
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01081}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.7
  • Coverage: 331.0
  • Bit_score: 565
  • Evalue 3.50e-158
Probable tRNA pseudouridine synthase B Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WMQ1_METH6 similarity UNIREF
DB: UNIREF100
  • Identity: 62.2
  • Coverage: 328.0
  • Bit_score: 424
  • Evalue 6.90e-116
putative tRNA pseudouridine synthase B similarity KEGG
DB: KEGG
  • Identity: 62.2
  • Coverage: 328.0
  • Bit_score: 424
  • Evalue 2.00e-116

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Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 996
ATGAGCTTTTTACCATCTGAGATAAAAAGAGAGAATCTGATAAAATCGGAAGATACGACAGACGAACGATCTGGCAAAAGACCGGCTGATCGCTCGATCCGGGAATACATAATGAAAGGGGCCGTGAACCTTGATAAACCTGCAGGCCCGACAAGCCATGAGGTAACATCCTGGGTTAAGAAAATTTTAGAAATTAAAAAGGCAGGGCACAGCGGAACCCTTGATCCGAATGTGACAGGTCTTCTTCCCATCATGCTGGGTGAAGCCACAAAGGCTGTGGATGCGCTTCTCACAGCAGGCAAGGAATATGTATGCCTCATGAAACTTCATGCAGAAGTGCCTGAAAAGGAAATAAAACGAGTTTTAAATGAGTTCACCGCCGAAATTTATCAGAAGCCGTCCATCAAATCTGCGGTAAAACGTGAAACCAGGATCAGAAGCATATATTATCTTGAACTTCTGGAGATCGATAAAAAGAACGTTCTCTTTAAGGCAGGATGTGAAGCAGGAACATATATCAGGAAACTGTGCCATGACATTGGACTGGCGCTTGGCACTGGCGCTCACATGCAGGAACTGCGGCGAGCGAAGAGCGGACCTTTTCGCGAGGATGAAACAATGGTCACACTCCATGATCTGAAAGATGCATCCATCGAATGGAAAGAAAACAACAGCGAGGAGTTATTAAGAAAGATCATACTCCCCATCGAGTTTGCAATATCGCATCTTCCAAAGATAGTGATTCGTGATAATGCCGTGGATGCGATATGTCATGGAGCAGAACTTGCAGCACCCGGCGTGCTCACACTTGAGAGCGGGATCGAGAAAGGGGATCTTGTGGCGATTTTTACCCTGAAAGGCGAGGCTGTCTCGTTCGGTCAGACGCAGATGAAATCTATCGAGATACTGAAAGCCGCAACAGGCATAGTTGCAACGACACACAGGGTGTTTATGGAGCCAGGAACGTATCCAAAAGGATGGAAGGCAAAAGAATAA
PROTEIN sequence
Length: 332
MSFLPSEIKRENLIKSEDTTDERSGKRPADRSIREYIMKGAVNLDKPAGPTSHEVTSWVKKILEIKKAGHSGTLDPNVTGLLPIMLGEATKAVDALLTAGKEYVCLMKLHAEVPEKEIKRVLNEFTAEIYQKPSIKSAVKRETRIRSIYYLELLEIDKKNVLFKAGCEAGTYIRKLCHDIGLALGTGAHMQELRRAKSGPFREDETMVTLHDLKDASIEWKENNSEELLRKIILPIEFAISHLPKIVIRDNAVDAICHGAELAAPGVLTLESGIEKGDLVAIFTLKGEAVSFGQTQMKSIEILKAATGIVATTHRVFMEPGTYPKGWKAKE*