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RifSed_csp2_16ft_3_scaffold_6389_11

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: comp(10626..11273)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding S4 domain protein Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12XA7_METBU similarity UNIREF
DB: UNIREF100
  • Identity: 55.3
  • Coverage: 217.0
  • Bit_score: 239
  • Evalue 2.70e-60
Putative rRNA methylase {ECO:0000313|EMBL:KCZ70713.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.3
  • Coverage: 215.0
  • Bit_score: 318
  • Evalue 3.70e-84
RNA-binding S4 similarity KEGG
DB: KEGG
  • Identity: 55.3
  • Coverage: 217.0
  • Bit_score: 239
  • Evalue 7.60e-61

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Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 648
ATGAGACTTGATTCTTATCTTGTGGAGATCGGAAATTTTAGCTCCCGCAGTCGCGCAAAGAGAGCCATCACCGAAGGGTTTGTGAAGGTGAATGGAAAAGTGATCATCAGACCCTCGTATGATATTGAATATTCCGATAATGTGGTGATCACAGAGGGTCTGGATAAGCCAGCAGGCTACTGGAAACTAAAAGAGATACATGAAAAGACAGGTCTTTTCAAAGCCGGCGACAGCGTGCTTGATATAGGTTCAAGTGCAGGGGGTTTTCTTCTTTTCGCAAGAGAGATCGCCTCGCATGTCCACGGTATTGAGTTCAGCCGTGAATTCCGTTCTGAGCTTGGAAGAATCGCACATGAACACCCCGGCATCACAGTTGAATCAGGCGATATATTTGCAATGACTTTTGATAAAGAGAAATTCGATGTTGTGCTCATGGACATCACCGCAAGTCCTCTGTCATCCATAAAGGCGCTTCTGAACGTACTTCCTGCATTAAAAAAAGACGGGACCTTACTTTTGGTGCTGAAACTGCCAAAAAAGAGGGAAACAGAGCCGATCCTCACGAAACTCATGTCGCTTGGACTGGAAATCATTAATGTACTGGAATCTGAGAAAGAAGAGGCGTATATCATAGCAAGGAAATCATAA
PROTEIN sequence
Length: 216
MRLDSYLVEIGNFSSRSRAKRAITEGFVKVNGKVIIRPSYDIEYSDNVVITEGLDKPAGYWKLKEIHEKTGLFKAGDSVLDIGSSAGGFLLFAREIASHVHGIEFSREFRSELGRIAHEHPGITVESGDIFAMTFDKEKFDVVLMDITASPLSSIKALLNVLPALKKDGTLLLVLKLPKKRETEPILTKLMSLGLEIINVLESEKEEAYIIARKS*