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RifSed_csp1_16ft_3_scaffold_24046_2

Organism: RifSed_csp1_16ft_3_Methanoperedens_43_8

partial RP 26 / 55 MC: 4 BSCG 15 / 51 ASCG 21 / 38
Location: comp(365..1150)

Top 3 Functional Annotations

Value Algorithm Source
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-) similarity KEGG
DB: KEGG
  • Identity: 67.2
  • Coverage: 256.0
  • Bit_score: 353
  • Evalue 4.40e-95
Exosome complex component Rrp42 Tax=Uncultured methanogenic archaeon RC-I RepID=RRP42_UNCMA similarity UNIREF
DB: UNIREF100
  • Identity: 67.2
  • Coverage: 256.0
  • Bit_score: 353
  • Evalue 1.50e-94
Tax=RBG_16_Euryarchaeota_41_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 87.6
  • Coverage: 259.0
  • Bit_score: 452
  • Evalue 2.60e-124

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Taxonomy

RBG_16_Euryarchaeota_41_19_curated → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 786
ATGTCAATGAGTAACGAGATAATGGCCGAACTTCATAAGGATTTTATATATAACCTCATGGTCAAAGGAGAGCGAGAGGACGGGCGGGCATTTGATCAATACAGAGAAATAAAGATAGAGACAAATGTCATCGATAAAGCTGAAGGCTCTTCACGCGTACAATTGGGAGATACTCATTTAGTCGTGGGAGTAAAGATCCAGACTGGAACACCTTTCCCTGACACCCCTGACCAGGGAGTTATAATTACTAACCTTGAATTGATACCCCTTGCTTCACCAGTATTCGAGGCAGGACCTCCAAGAGAGGATGCGATCGAACTCGCAAGGGTGGTTGACAGAGGCATAAGGGAATCACAGGCGATAGACCTCTCAAAGCTTTGCATAACTCCGGGTGAAAAGGTATGGATGGTTTTCATTGACGTTCATGTCTTAGACGACGGAGGGAACATTATGGACGCAGCTTCACTTGGCGCAACCGCTGCTCTTTTAACAGCGAAATTACCCAATAGCAGATTTGGACTTGGTGAAGATTCACCTGTTCCGATGAGGGATGTACCTGTTGCCGTTACGGCAGTGGAGATCGGAGGGACCATAATGCTTGACCCGTCCCAGAACGAACAAAGCATTGCAGGGACCAGATTGACCGTCACATCCAATCAGAATGGGGACGTATCAGCCATGCAGAAGAGCGGAGTCCACCCCCTTACCACCGAACAGATAAATTATATAGTGGATATTGCAATTGAGAAGGCCAAAGAAATAAGAGAAAAATTCCTGGTGATATAA
PROTEIN sequence
Length: 262
MSMSNEIMAELHKDFIYNLMVKGEREDGRAFDQYREIKIETNVIDKAEGSSRVQLGDTHLVVGVKIQTGTPFPDTPDQGVIITNLELIPLASPVFEAGPPREDAIELARVVDRGIRESQAIDLSKLCITPGEKVWMVFIDVHVLDDGGNIMDAASLGATAALLTAKLPNSRFGLGEDSPVPMRDVPVAVTAVEIGGTIMLDPSQNEQSIAGTRLTVTSNQNGDVSAMQKSGVHPLTTEQINYIVDIAIEKAKEIREKFLVI*