ggKbase home page

RifSed_csp1_16ft_3_scaffold_24046_5

Organism: RifSed_csp1_16ft_3_Methanoperedens_43_8

partial RP 26 / 55 MC: 4 BSCG 15 / 51 ASCG 21 / 38
Location: comp(2663..3358)

Top 3 Functional Annotations

Value Algorithm Source
Shwachman-Bodian-Diamond syndrome protein Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B8W5_METTP similarity UNIREF
DB: UNIREF100
  • Identity: 66.2
  • Coverage: 231.0
  • Bit_score: 316
  • Evalue 1.40e-83
rRNA metabolism protein, SBDS family {ECO:0000313|EMBL:KCZ70726.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 231.0
  • Bit_score: 394
  • Evalue 9.80e-107
putative RNA-associated protein similarity KEGG
DB: KEGG
  • Identity: 66.2
  • Coverage: 231.0
  • Bit_score: 316
  • Evalue 4.00e-84

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 696
ATGGTCGCTTTAGATGAGTCCATAATCGCACGTCTTAAGACGCATGGAAAAACATTTGAAGTTTTTGTTGACCCTGATGGAGCGCTGGCTTTTAAAAAAGGCGAACCGATAAAGATAGAGAACATCCTTGCAGTGGATGATGTATTCTCTGACGCTAAGAACGGGGACAGGCCTGCAGAACAAGACGTTATTAATGCGTTCGGTACAACAGAAGTCCCAAAGATCGCTGAAAAGATAATACTTGAAGGAGAGCTTCAGCTTACTACCGAGCAGCGCAGAAAGATACAGGAAGATAAGAAAAGACAGGTCATTACGTTCATTGCGCAGAATGCCATTAATCCCCAGACAAAAGCCCCGCATCCACCGGCGCGTATAGAAGCTGCCATGGAAGAAGCAGGAGTTCATATAGATCCCATGAAAAGCCTTGATGAAATGGTTGAGATAACCATGAAGGCCTTGCGCCCTCTTATTCCGATACGTTTTGAAGTTATTAAGGTAGCCATTAAACTTCCGGCTGAATATGCTGCAAAATCATATGGCGCTGTCGCGAAGTTCGGGAACCTGACAAAGCAGGAATGGCAGAACGATGGTTCCTGGATCGGTGTTATTGAGATACCTGCAGGGATGCAGGATGATCTGTACAATCTCCTTAATTCGCATACTAAGGGTTCTGCAGAAACAAAATTATTAAAGTGA
PROTEIN sequence
Length: 232
MVALDESIIARLKTHGKTFEVFVDPDGALAFKKGEPIKIENILAVDDVFSDAKNGDRPAEQDVINAFGTTEVPKIAEKIILEGELQLTTEQRRKIQEDKKRQVITFIAQNAINPQTKAPHPPARIEAAMEEAGVHIDPMKSLDEMVEITMKALRPLIPIRFEVIKVAIKLPAEYAAKSYGAVAKFGNLTKQEWQNDGSWIGVIEIPAGMQDDLYNLLNSHTKGSAETKLLK*