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PLM4_65_b1_redo_sep16_scaffold_1781

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1781_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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2..499
-----------------
DNA (498bp)
protein (166aa)
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPB7_ROSCS
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1781_2
RBG_16_OP11_45_19_curated, Microgenomates, Bacteria

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comp(533..1141)
-----------------
DNA (609bp)
protein (203aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B3EECB
conserved hypothetical protein
Tax=RBG_16_OP11_45_19_curated
PLM4_65_b1_redo_sep16_scaffold_1781_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(1206..2504)
-----------------
DNA (1299bp)
protein (433aa)
Major facilitator superfamily permease bin=GWA2_Ignavibacteria_55_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Major facilitator superfamily permease
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1781_trna_1
unknown

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comp(2648..2721)
-----------------
DNA (74bp)
transferRNA Pro
PLM4_65_b1_redo_sep16_scaffold_1781_4
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

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2870..4696
-----------------
DNA (1827bp)
protein (609aa)
Long-chain acyl-CoA synthetase Tax=uncultured Acidobacteria bacterium RepID=H5SH85_9BACT bin=16ft_combo_ws3_JS1 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
AMP-dependent synthetase and ligase
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_65_b1_redo_sep16_scaffold_1781_5
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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4696..6813
-----------------
DNA (2118bp)
protein (706aa)
Fatty oxidation complex, alpha subunit bin=GWA1_Deltaproteobacteria_52_35 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
fadJ; Fatty acid oxidation complex subunit alpha
Tax=GWA1_Bdellovibrionales_52_35_curated
PLM4_65_b1_redo_sep16_scaffold_1781_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(6810..7616)
-----------------
DNA (807bp)
protein (269aa)
Protein serine/threonine phosphatase Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E9M8_GEOLS
protein serine/threonine phosphatase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1781_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(7616..8263)
-----------------
DNA (648bp)
protein (216aa)
Heat shock protein DnaJ domain protein Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E4A5_FLESM
Uncharacterized protein {ECO:0000313|EMBL:KDA53965.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
heat shock protein DnaJ domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1781_8
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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comp(8266..9282)
-----------------
DNA (1017bp)
protein (339aa)
Uncharacterized protein Tax=Holophaga foetida DSM 6591 RepID=H1P0F1_9BACT
hypothetical protein
Tax=RBG_13_RIF03_48_7_curated
PLM4_65_b1_redo_sep16_scaffold_1781_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(9288..10220)
-----------------
DNA (933bp)
protein (311aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcriptional regulator
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_1781_10
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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comp(10280..11029)
-----------------
DNA (750bp)
protein (250aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_b1_redo_sep16_scaffold_1781_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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11072..13153
-----------------
DNA (2082bp)
protein (694aa)
Transcription elongation factor Tax=planctomycete KSU-1 RepID=I3ILX5_9PLAN
greA; transcription elongation factor greA
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1781_12
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(13201..14889)
-----------------
DNA (1689bp)
protein (563aa)
Cell wall hydrolase/autolysin Tax=Holophaga foetida DSM 6591 RepID=H1P0E6_9BACT
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1781_13
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

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comp(15094..16557)
-----------------
DNA (1464bp)
protein (488aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C542_SPHTD
glutamyl-tRNA(Gln) amidotransferase subunit A
Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
PLM4_65_b1_redo_sep16_scaffold_1781_14
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16550..16879)
-----------------
DNA (330bp)
protein (110aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000255|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000255|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00122};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=GATC_ANADF
glutamyl-tRNA(Gln) amidotransferase subunit C
PLM4_65_b1_redo_sep16_scaffold_1781_15
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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16930..18231
-----------------
DNA (1302bp)
protein (434aa)
Cytidine-specific tRNA nucleotidyltransferase Tax=Geobacter sulfurreducens RepID=D7AL88_GEOSK
ccaC; cytidine-specific tRNA nucleotidyltransferase
Tax=RBG_13_Chloroflexi_56_8_curated
PLM4_65_b1_redo_sep16_scaffold_1781_16
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(18228..19637)
-----------------
DNA (1410bp)
protein (470aa)
Twitching mobility protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U6Y8_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:KDA54216.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
twitching mobility protein
PLM4_65_b1_redo_sep16_scaffold_1781_17
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(19724..20359)
-----------------
DNA (636bp)
protein (212aa)
LexA repressor bin=GWC2_TM7_48_9 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
LexA repressor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1781_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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20371..21825
-----------------
DNA (1455bp)
protein (485aa)
Peptidase M16 domain protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XXY1_9BACT
peptidase M16 domain protein
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG88453.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_1781_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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21882..23237
-----------------
DNA (1356bp)
protein (452aa)
Predicted Zn-dependent peptidase {ECO:0000313|EMBL:CDM64325.1}; EC=3.4.24.- {ECO:0000313|EMBL:CDM64325.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative M16B family peptidase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN3_GEMAT
peptidase M16 domain protein
PLM4_65_b1_redo_sep16_scaffold_1781_20
unknown

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comp(23234..23710)
-----------------
DNA (477bp)
protein (159aa)

This feature has no annotations

Displaying 21 items

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