ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_1579_22

Organism: PLM4_65_b1_sep16_Acidobacteria_71_15

near complete RP 49 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 13 / 38
Location: 19053..19592

Top 3 Functional Annotations

Value Algorithm Source
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 53.0
  • Coverage: 183.0
  • Bit_score: 189
  • Evalue 2.60e-45
def2; formylmethionine deformylase similarity KEGG
DB: KEGG
  • Identity: 52.8
  • Coverage: 180.0
  • Bit_score: 170
  • Evalue 2.70e-40
Tax=RBG_16_Acidobacteria_70_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 75.4
  • Coverage: 179.0
  • Bit_score: 276
  • Evalue 1.40e-71

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_Acidobacteria_70_10_curated → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 540
ATGTCCATCCTGAAAGTCGCTCGCATCGCCCACCCGGTCCTGCGCTCGCCCGCGAAGCCCGTCCCGAAGGCCGCCTTCAAGGACCCGCTGTTCCAGAAGCTCGTCGACGACATGCGCGAGACGATGTACGAGTACGAGGGAGTCGGGCTCGCGGCACCCCAGGTCCACGAGGGCCTGCGCCTCGCCGTGATCGAGGTCGCGGCCGACGACGAGCGCTCGAAGGCCGAGGTGGCGTTCGTGGTGCTCGTGAACCCGGTGATCACCCCGCTTGGCGAGGAGAAGGCGAACGGCTGGGAGGGCTGCCTGTCGATCCCCGACCTGCGCGGTGTCGTGCCGCGCTTCAAGCGAGTGAAGCTCGAGGCCCTCGACCGCGACGGCAAGCCCTACTCGCTCGAGGCCCAAAACTTCTTCGCCCGCGTGATCCAGCACGAGTGCGACCACCTCGACGGCTTCGTCTACCCCGACCGGATGCAGGGCATGCGCAGCCTGACCTTCATCAAGGAGTTCGAGGACCACGTCCACAAGGACGAGGAGGAGTAG
PROTEIN sequence
Length: 180
MSILKVARIAHPVLRSPAKPVPKAAFKDPLFQKLVDDMRETMYEYEGVGLAAPQVHEGLRLAVIEVAADDERSKAEVAFVVLVNPVITPLGEEKANGWEGCLSIPDLRGVVPRFKRVKLEALDRDGKPYSLEAQNFFARVIQHECDHLDGFVYPDRMQGMRSLTFIKEFEDHVHKDEEE*