ggKbase home page
Advanced Search
Search Help

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

PLM4_65_coex_sep16_scaffold_1993_5

Organism: PLM4_65_coex_sep16_Rokubacteria_70_16

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 8 / 38
Location: comp(3549..7736)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 similarity UNIREF
DB: UNIREF100
  • Identity: 85.9
  • Coverage: 1399.0
  • Bit_score: 2368
  • Evalue 0.0
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 67.8
  • Coverage: 1353.0
  • Bit_score: 1842
  • Evalue 0.0
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 92.6
  • Coverage: 1397.0
  • Bit_score: 2565
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Rokubacteria_71_22 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 4188
ATGCTGACGGATCGGCCTTTCGGCAGCCTGATCAGAGAGGACAAGCCTACCAAGGACCTGTGGGGCATCCTCGATCGGCATGCGAAGCCCATCACGTTTGATGCGATTCGGATCAAGCTCGCGGCGCCGCAGAAGATCCGCGACTGGTCGCACGGCGAGGTGAAGAAGCCGGAGACCATCAACTATCGGACCTTCAAGCCGGAGCGCGACGGTCTGTTCTGCGCGCGCATCTTCGGACCCACCAAGGACTACGAGTGCGCGTGCGGCAAGTACAAGCGGATGAAGTTTGCCGGCGTCATCTGCGACAAGTGCGGGGTCGAGGTGACGCGGGCCCGGGTGCGGCGCGAGCGCATGGGCCACATCGAGCTGGCCTCGCCCGTGTCCCACGTGTGGTTCTTCAAGGGGCTGCCCAGCCGGATCGGCCAGCTCCTCGACATGTCCCTGCGCGAGCTGGAGAAGATCCTCTACTTCGAGGAATACGTGTGCCTCGAGTCGCGGATCAACGGCATCAAGAAGAAGGACCTGGTCGGCGTCGACAAGGTCCGCAAGCTCCACGAGGAGCACGGCGCCGACGCCCTCAAGGTCGGCATGGGCGCCGAGGCCATCCGCGAGCTGCTGCGCGACATGGACCTCGACTCGCTGGCCCGCGACCTCCGGGCCCAGATGCTGGGCGAGACCTCGATCCAGAAGCGCAAGAAGATCGTCAAGCGCTTGAAGGTCATCGAGGCCTTCCTGAAGTCCGGCAACCAGCCGGAGTGGATGATCCTCGAGGTCGTCCCGGTCATCCCGCCGGAGCTGCGCCCGCTGGTGCCTCTCGACGGCGGGCGCTTTGCGACGTCGGACCTGAACGATCTCTACCGGCGCGTCATCAACCGCAACAATCGCCTCAAGCGCCTCATGGACCTCAAGGCGCCCGAGATCATCATCCGCAACGAAAAGCGGATGCTTCAAGAAGCCGTCGACGCGCTGTTCGACAACGGCCGCCGGGGCCGGGTGATCACGGGTCCGAACAATCGTCCCCTGAAGTCGCTGTCCGACACCCTCAAGGGAAAGCAAGGCCGCTTCCGCCAGAACCTGCTCGGCAAGCGCGTGGATTATTCGGGGCGTTCAGTCATCGTGGTCGGCCCCTATCTCAAGCTGCACCAGTGTGGGCTGCCCAAAAAGATGGCGCTGGAGCTGTTCAAGCCGTTCATCCTGCGCAAGCTGGAGGAGCGGGGCATCGCGTCGTCGATCAAGGCCGCCAAGAAATTCGTCGAGAAGGAGCGGCCGGAGGTCTGGGATATCCTGGACGACGTCATCAAGGAGCACCCGGTGCTGCTGAACCGGGCGCCGACGCTCCACCGGCTTGGCATCCAGGCCTTCGAGCCCATCCTGGTCGAGGGCAAGGCCATCGAGATCCACCCGCTGGTGTGCACGGCCTTCAACGCGGACTTCGACGGCGACCAGATGGCGGTCCACATTCCGCTGTCGATGGAGGCCCAGCTCGAGGCCCAGGTGCTGATGCTGTCGGCCAACAACATCCTGTCGCCGTCCAACGGGGCGCCGATCGCGGTGCCGACGCAGGACATGGTGCTCGGCATCTACTACCTGACCAAGGAACGGCTGTCCACGCCGGAGCACCCGGTGCGGGGCGAGGGCCGGCTGTTCGCCGACCCCGAAGAGGTCCGGATCGCCTACGACAACGAGGACGTCGACCTGCAGGCCCGCATCCGTCTGCGCTGGAAGGGCGAGATCTTCGACACCACCGTGGGCCGCACGCTCTTCAACGAGACGGTGCCGGAGCCGCTGCGGTTCGTGAACCAGGAGCTGAAGAAGAAGGAGGTCACCGCCCTCGTCGGCCGCTGCATGAACCAGCTCGGCAACGAGGCCACCGTGCACTTCCTCGACGAGCTGAAGGACCTCGGCTTCCGCTACGCCACGCTGTCGGGGCTCTCGATCGGCATCGACGACATGCACATCCCGTCGTCGAAGGAGCAGCTGATCGGCAGCGCGCGGGCCCAGGTGATGGAGGTCGAGACCCAGTACCAGGACGGCGTCATCACCAACGGCGAGCGCTACAACAAGGTCGTCGACATCTGGGCCCACGTGACCGAGCAGATCGCCGACCAGATGTTCAAGGAGCTGGAGGAGGGCGAGCAGGGCGGCGAGTTCAACCCCATCTTCATGATGGCCGACTCGGGCGCCCGGGGCTCCAAGCAGCAGATCCGCCAGCTGGCCGGCATGCGCGGCCTCATGGCCAAGCCGTCGGGCGAGATCATCGAGACCCCGATCACGTCCAACTTCCGCGAGGGCCTCACCGTGCTGGAGTACTTCACCTCCACCCACGGCGCCCGCAAGGGCCTGGCCGACACCGCGCTGAAGACGGCCGACTCCGGCTATCTGACGCGCCGGCTCGTCGACGTCGCCCAGGACGTCATCGTGAGCGAGTACGACTGCGGCACCGTGAAGTACATCGAGGCCACCCCGCTCGTCGAGGGCGGCGACATCATCCAGTCCCTGCGCGACCGCATCCTCGGCCGCACGACCGCCGAGGACGTGCGGGACCCGCTGTCGCAGGAGATCATCGTCCAGGGCAACACCGAGATCATCGAGGAGCTGGCCCAGAAGATCGAGGACTCCGGCCTCGAGCGGGTGCGCATCCGCTCGACCCTGACCTGCGACACCAAGCGCGGCATCTGCGTGCTGTGCTACGGCCGCAACCTCGGCTCCGGCCGCCTGGCCGAGCTGGGCGAGGCGGTCGGCATCATCGCCGCCCAGTCCATCGGCGAGCCGGGCACCCAGCTCACGATGCGGACGTTCCACATCGGCGGCACCGCCAGCCGGGTCGTCGAGGCGTCCAAGCACGAGTCGAAGAGCGCGGGGGTGGTGAAGTTCCACAACCTGCGCACCGTCGTCAACCGCGACGGCGATCTGGTGGCCACCAACCGCAACGGCGAGATCGCCGTGGCCGACGAGCGCGGGCGCGAGCGCGAGCGGTACCCGGTCGTGTACGGCGCCAAGATCAAGGTCAAGGCCGAGCAGAAGGTCAAGCTCCGCGCGGTGCTGGTCGAGTGGGATCCGTTCACCAACCCGATCCTCACGGAGTTCACCGGGAAGGTGGAGTACCAGGACATCGTCGAGAACGTGACCGTGCGCGAGGAGTTCGACGAGGTCACCGGCCTGTCGCGGCGGGTGGTCATCGAGGACGCCGAGGGCCGGTTGCAGCCGGGCGTCATCATCCGCTCGCTGGAGGGCAGCCTCACGCCGACCGGGGAGCGCCACCGCTACCCGCTGCCGGTGGGCGCCAACCTGGCAGTGCCCGATGGTGCCGACGTCTTCGCGGCCGACATCATCGCCAAGATCCCGCGCGAGACGACCAAGACCAAGGACATCACCGGCGGTCTGCCGCGGGTGGCCGAGCTGTTCGAAGCGCGCAAGCCCAAGGAGCAGGCGGTCATCACCGAGATCGACGGGCGCGTGGAGATGGGCGGTTTCGTCAAGGGCATGCGGAAGATCGTGATTCGAGCGGACAACGCAGAGATGAAGGAGTACCTGATTCCTCGAGGCAAGCACATCAGCGTCCACGAGGGCGATCGGGTCAAGGCGGGCGAGGCACTCATGGACGGCTCCCCGAACCCGCACGACTATCTCGCCGTCCTCGGTGACCGCGAGCTGCAGCGCTACCTGGTCAACGAGGTGCAGGAGGTCTATCGCCTGCAGGGTGTGACGATCAACGACAAGCACATCGAGATCATCGTGCGCCAGATGTTGCGGCGCGTGCGGATCGAGGAAGTCGGCGACACCGATTTTGTGGTCGGCGAGCTGGTCGACAAGTTCGTGTTCCAGGAGGAGAACGAGCGGGTGCTGAGCCAGGGCAAGCGCCCGGCCACCGCCAAGCCGGTGCTCCTCGGCATCACCAAGGCCTCGCTGTCGACCGACAGCTTCATCTCGGCGGCCTCCTTCCAGGAGACCACCCGGGTGCTGACGGAAGCGGCGATCTCCGGGAAGACCGACGATCTGCGCGGCCTCAAGGAGAACGTCATCGTCGGCCGGCTCATCCCGGCCGGCACCGGCCTCAACAACTACACCCGGGTCGAGGTCCTCACACCGGGCGGCGAGGCCGTGAAGCCGCTCGACAGCATCATGAGCTTCCAGACGCCGCCGCCGGAGCCGGCCGACGGTGAAGGCTCGGTGGCCGTCGCCGGCTGA
PROTEIN sequence
Length: 1396
MLTDRPFGSLIREDKPTKDLWGILDRHAKPITFDAIRIKLAAPQKIRDWSHGEVKKPETINYRTFKPERDGLFCARIFGPTKDYECACGKYKRMKFAGVICDKCGVEVTRARVRRERMGHIELASPVSHVWFFKGLPSRIGQLLDMSLRELEKILYFEEYVCLESRINGIKKKDLVGVDKVRKLHEEHGADALKVGMGAEAIRELLRDMDLDSLARDLRAQMLGETSIQKRKKIVKRLKVIEAFLKSGNQPEWMILEVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMDLKAPEIIIRNEKRMLQEAVDALFDNGRRGRVITGPNNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKLHQCGLPKKMALELFKPFILRKLEERGIASSIKAAKKFVEKERPEVWDILDDVIKEHPVLLNRAPTLHRLGIQAFEPILVEGKAIEIHPLVCTAFNADFDGDQMAVHIPLSMEAQLEAQVLMLSANNILSPSNGAPIAVPTQDMVLGIYYLTKERLSTPEHPVRGEGRLFADPEEVRIAYDNEDVDLQARIRLRWKGEIFDTTVGRTLFNETVPEPLRFVNQELKKKEVTALVGRCMNQLGNEATVHFLDELKDLGFRYATLSGLSIGIDDMHIPSSKEQLIGSARAQVMEVETQYQDGVITNGERYNKVVDIWAHVTEQIADQMFKELEEGEQGGEFNPIFMMADSGARGSKQQIRQLAGMRGLMAKPSGEIIETPITSNFREGLTVLEYFTSTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVSEYDCGTVKYIEATPLVEGGDIIQSLRDRILGRTTAEDVRDPLSQEIIVQGNTEIIEELAQKIEDSGLERVRIRSTLTCDTKRGICVLCYGRNLGSGRLAELGEAVGIIAAQSIGEPGTQLTMRTFHIGGTASRVVEASKHESKSAGVVKFHNLRTVVNRDGDLVATNRNGEIAVADERGRERERYPVVYGAKIKVKAEQKVKLRAVLVEWDPFTNPILTEFTGKVEYQDIVENVTVREEFDEVTGLSRRVVIEDAEGRLQPGVIIRSLEGSLTPTGERHRYPLPVGANLAVPDGADVFAADIIAKIPRETTKTKDITGGLPRVAELFEARKPKEQAVITEIDGRVEMGGFVKGMRKIVIRADNAEMKEYLIPRGKHISVHEGDRVKAGEALMDGSPNPHDYLAVLGDRELQRYLVNEVQEVYRLQGVTINDKHIEIIVRQMLRRVRIEEVGDTDFVVGELVDKFVFQEENERVLSQGKRPATAKPVLLGITKASLSTDSFISAASFQETTRVLTEAAISGKTDDLRGLKENVIVGRLIPAGTGLNNYTRVEVLTPGGEAVKPLDSIMSFQTPPPEPADGEGSVAVAG*