ggKbase home page

PLM3-1_170_b2_sep16_scaffold_102

Search features with annotation key words

Displaying items 1-30 of 174 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_102_1
unknown

Not on your lists

comp(254..481)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_102_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

769..2070
DNA (1302bp) protein (434aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
phosphomethylpyrimidine kinase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_3
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

2117..2818
DNA (702bp) protein (234aa)
Nucleotidyl transferase Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D1Y1_9ARCH
Nucleotidyl transferase {ECO:0000313|EMBL:EIJ65724.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
Nucleotidyl transferase
PLM3-1_170_b2_sep16_scaffold_102_4

Not on your lists

2828..3262
DNA (435bp) protein (145aa)
GCN5-related N-acetyltransferase (GNA1) {ECO:0000313|EMBL:AIE97680.1}; EC=2.3.1.4 {ECO:0000313|EMBL:AIE97680.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_02_A10.;"
Acetyltransferase, GNAT family Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E0Z8_9ARCH
N-acetyltransferase GCN5
PLM3-1_170_b2_sep16_scaffold_102_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(3259..3678)
DNA (420bp) protein (140aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_6
unknown

Not on your lists

3904..4140
DNA (237bp) protein (79aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_102_7
Ferroglobus placidus, Ferroglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

4147..4416
DNA (270bp) protein (90aa)
Addiction module toxin, RelE/StbE family Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXD9_FERPA
addiction module toxin, RelE/StbE family
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:ADC65152.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Ferroglobus.;" source="Ferroglobus placidus (strain DSM 10642 / AEDII12DO).;"
PLM3-1_170_b2_sep16_scaffold_102_8
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(4461..4865)
DNA (405bp) protein (135aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJC4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14497.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_102_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

4892..5164
DNA (273bp) protein (91aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14496.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_102_10
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(5300..6316)
DNA (1017bp) protein (339aa)
Galactose-1-phosphate uridylyltransferase Tax=Thaumarchaeota archaeon N4 RepID=V6AQP6_9ARCH
Galactose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:CDI04875.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Galactose-1-phosphate uridylyltransferase
PLM3-1_170_b2_sep16_scaffold_102_11
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

6382..7704
DNA (1323bp) protein (441aa)
Phosphoglycerate mutase {ECO:0000313|EMBL:CDI04874.1}; EC=5.4.2.- {ECO:0000313|EMBL:CDI04874.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Phosphoglycerate mutase Tax=Thaumarchaeota archaeon N4 RepID=V6AQM4_9ARCH
phosphoglycerate mutase
PLM3-1_170_b2_sep16_scaffold_102_12
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(7694..8242)
DNA (549bp) protein (183aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PF03745 domain protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

8336..8800
DNA (465bp) protein (155aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_14
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

8800..8994
DNA (195bp) protein (65aa)
30S ribosomal protein S27ae Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KI23_9ARCH
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
rps27ae; 30S ribosomal protein S27ae
PLM3-1_170_b2_sep16_scaffold_102_15

Not on your lists

comp(8995..9696)
DNA (702bp) protein (234aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Uncharacterized protein {ECO:0000313|EMBL:KKK88513.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_102_16
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9749..10906)
DNA (1158bp) protein (386aa)
Pseudouridylate synthase-like protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KI20_9ARCH
Pseudouridylate synthase-like protein {ECO:0000313|EMBL:EGG42977.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
pseudouridylate synthase-like protein
PLM3-1_170_b2_sep16_scaffold_102_17
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10978..11673)
DNA (696bp) protein (232aa)
heat shock protein DnaJ domain-containing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin2_Thaum organism_group=Archaeon
Heat shock protein DnaJ domain-containing protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_18
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


comp(11707..13035)
DNA (1329bp) protein (443aa)
GTP-binding signal recognition particle bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
srp; Signal recognition particle 54 kDa protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_19
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(13035..13718)
DNA (684bp) protein (228aa)
ATP-binding protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ATP-binding protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_20
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists


comp(13991..14398)
DNA (408bp) protein (136aa)
Putative translation initiation factor 5A Tax=Thaumarchaeota archaeon N4 RepID=V6AQ92_9ARCH
Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; eIF-5A {ECO:0000256|HAMAP-Rule:MF_00085}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
eif5A; translation elongation factor IF5A
PLM3-1_170_b2_sep16_scaffold_102_21
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(14434..15036)
DNA (603bp) protein (201aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(15395..16024)
DNA (630bp) protein (210aa)
CBS and Zinc Finger C2H2 domain-containing membrane protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILW0_NITGG
putative signal-transduction protein containing cAMP-binding and CBS domains
CBS and Zinc Finger C2H2 domain-containing membrane protein {ECO:0000313|EMBL:AIC15758.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_102_23
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(16147..17199)
DNA (1053bp) protein (351aa)
NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:CDI04843.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CDI04843.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
NAD-dependent alcohol dehydrogenase Tax=Thaumarchaeota archaeon N4 RepID=V6AR00_9ARCH
alcohol dehydrogenase
PLM3-1_170_b2_sep16_scaffold_102_24
unknown

Not on your lists

17393..17551
DNA (159bp) protein (53aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_102_25
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

17532..18206
DNA (675bp) protein (225aa)
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
chromosome segregation and condensation protein ScpA
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_102_26

Not on your lists

18260..18838
DNA (579bp) protein (193aa)
Chromosome segregation and condensation protein ScpB Tax=Thaumarchaeota archaeon N4 RepID=V6AQ87_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL85095.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
chromosome segregation and condensation protein ScpB
PLM3-1_170_b2_sep16_scaffold_102_27

Not on your lists

18931..19311
DNA (381bp) protein (127aa)
ribosomal protein S8E; K02995 small subunit ribosomal protein S8e bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Uncharacterized protein {ECO:0000313|EMBL:KKL85094.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ribosomal protein S8E
PLM3-1_170_b2_sep16_scaffold_102_28
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

19316..19615
DNA (300bp) protein (100aa)
Signal recognition particle, subunit SRP19 (SRP19) Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A202_NITMS
signal recognition particle subunit SRP19
Signal recognition particle, subunit SRP19 (SRP19) {ECO:0000313|EMBL:ABX12415.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b2_sep16_scaffold_102_29
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

19690..19959
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BA14_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJW71347.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_170_b2_sep16_scaffold_102_30
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

19956..20915
DNA (960bp) protein (320aa)
Zinc finger TFIIB-type domain protein Tax=Thaumarchaeota archaeon N4 RepID=V6AQF5_9ARCH
Zinc finger TFIIB-type domain protein {ECO:0000313|EMBL:CDI04837.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Zinc finger TFIIB-type domain protein
Displaying items 1-30 of 174 in total

View Taxonomy