ggKbase home page

PLM3-1_170_b2_sep16_scaffold_4338

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_4338_1
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..560
DNA (558bp) protein (186aa)
Peptidase U61, LD-carboxypeptidase A Tax=Micromonospora sp. ATCC 39149 RepID=C4RML4_9ACTO
Peptidase U61, LD-carboxypeptidase A {ECO:0000313|EMBL:EEP71013.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
ldcA; muramoyltetrapeptide carboxypeptidase
PLM3-1_170_b2_sep16_scaffold_4338_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(579..1874)
DNA (1296bp) protein (432aa)
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NSQ3_GRAMM bin=16ft_combo_ws3_JS1 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_4338_3
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

1979..3211
DNA (1233bp) protein (411aa)
Rhomboid family protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LG54_HALO1
rhomboid family protein
Tax=BJP_IG2102_Coriobacteriales_64_17
PLM3-1_170_b2_sep16_scaffold_4338_4
unknown

Not on your lists

comp(3227..3760)
DNA (534bp) protein (178aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4338_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3949..5016
DNA (1068bp) protein (356aa)
mreB; rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
mreB; rod shape-determining protein MreB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_4338_6
RLO_PLX_64_10, Bacteria

Not on your lists

5036..5908
DNA (873bp) protein (291aa)
Cell shape-determining protein MreC bin=GWA2_Ignavibacteria_55_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
rod shape-determining protein MreC
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_4338_7
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

5905..6399
DNA (495bp) protein (165aa)
Putative uncharacterized protein Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J7K3_DESRM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM3-1_170_b2_sep16_scaffold_4338_8
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

6403..7281
DNA (879bp) protein (293aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
penicillin-binding protein 2 (EC:2.4.1.129)
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3-1_170_b2_sep16_scaffold_4338_9
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

7263..8201
DNA (939bp) protein (313aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
penicillin-binding protein 2 (EC:2.4.1.129)
Tax=RBG_16_Zixibacteria_50_21_curated
PLM3-1_170_b2_sep16_scaffold_4338_10
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

8203..8487
DNA (285bp) protein (95aa)
rod shape-determining protein RodA
Tax=RBG_16_Zixibacteria_53_22_curated
Displaying 10 items

View Taxonomy