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PLM3-1_170_b2_sep16_scaffold_1760

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1760_1
unknown

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2..76
DNA (75bp) protein (25aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1760_2
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(129..1844)
DNA (1716bp) protein (572aa)
Sulfatase Tax=Methylobacterium sp. (strain 4-46) RepID=B0UGK6_METS4
sulfatase
Sulfatase {ECO:0000313|EMBL:ACA20998.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
PLM3-1_170_b2_sep16_scaffold_1760_3
unknown

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2127..2834
DNA (708bp) protein (236aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1760_4
unknown

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2844..3119
DNA (276bp) protein (92aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1760_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3260..5779)
DNA (2520bp) protein (840aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ATP-dependent protease La
Lon protease bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
PLM3-1_170_b2_sep16_scaffold_1760_6
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6416..8242)
DNA (1827bp) protein (609aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
histidine kinase Tax=Paenibacillus ginsengihumi RepID=UPI0003704A88
histidine kinase
PLM3-1_170_b2_sep16_scaffold_1760_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8385..9869
DNA (1485bp) protein (495aa)
23S rRNA (Uracil-5-)-methyltransferase RumA Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LEY8_SYNFM bin=16ft_combo_ws3_JS1 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RNA methyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1760_8
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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9869..12538
DNA (2670bp) protein (890aa)
Peptidase M16 domain protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8P0_SPHTD
peptidase M16 domain-containing protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ACZ40183.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_170_b2_sep16_scaffold_1760_9
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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12525..13799
DNA (1275bp) protein (425aa)
polymorphic outer membrane protein bin=bin1_lowGC species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b2_sep16_scaffold_1760_10
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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13894..14673
DNA (780bp) protein (260aa)
protease Tax=Sphingomonas elodea RepID=UPI00026321B2
protease
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM3-1_170_b2_sep16_scaffold_1760_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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14856..15929
DNA (1074bp) protein (358aa)
pbpG; D-alanyl-D-alanine carboxypeptidase (EC:3.4.99.-)
peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 Tax=Psychrobacter sp. PAMC 21119 RepID=UPI000287BEBC bin=16ft_combo_ws3_JS1 species=Psychrobacter sp. PAMC 21119 genus=Psychrobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1760_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15934..17481
DNA (1548bp) protein (516aa)
peptidase M23B bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Microbacterium laevaniformans genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Membrane proteins related to metalloendopeptidases
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1760_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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17592..19163
DNA (1572bp) protein (524aa)
Glycosyl transferase, family 39 Tax=Pedosphaera parvula Ellin514 RepID=B9XPL0_9BACT
Glycosyl transferase, family 39 {ECO:0000313|EMBL:EEF58238.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyl transferase family protein
PLM3-1_170_b2_sep16_scaffold_1760_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(19180..21654)
DNA (2475bp) protein (825aa)
FG-GAP repeat/calx-beta domain protein (Modular protein) Tax=Microcystis aeruginosa PCC 9807 RepID=I4H7R1_MICAE bin=16ft_combo_ws3_JS1 species=Microcystis aeruginosa genus=Microcystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 14 items

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