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PLM3-1_170_b2_sep16_scaffold_1783

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1783_1
RLO_RIF05_58_11, RIF5, Bacteria

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2..3652
DNA (3651bp) protein (1217aa)
Chromosome partition protein Smc Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SI80_RHOMR
chromosome segregation protein SMC
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM3-1_170_b2_sep16_scaffold_1783_2
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3676..4605
DNA (930bp) protein (310aa)
Signal recognition particle receptor FtsY Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0FA43_DESDL
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
PLM3-1_170_b2_sep16_scaffold_1783_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4586..6037)
DNA (1452bp) protein (484aa)
Diguanylate cyclase with GAF sensor Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A1P3_MAHA5 bin=16ft_combo_ws3_JS1 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
diguanylate cyclase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1783_4
unknown

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6387..6773
DNA (387bp) protein (129aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1783_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6825..9149
DNA (2325bp) protein (775aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Burkholderia RepID=A0KE50_BURCH bin=16ft_combo_ws3_JS1 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Sigma-54 dependent transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1783_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9200..9655
DNA (456bp) protein (152aa)
NADH-quinone oxidoreductase subunit I; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
nuoI; NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) (EC:1.6.99.5)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1783_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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9683..10441
DNA (759bp) protein (253aa)
Zinc/iron transporter Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJU3_9BACT
Zinc/iron transporter
Zinc/iron transporter {ECO:0000313|EMBL:CBE67526.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1783_8
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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10566..11078
DNA (513bp) protein (171aa)
nqo; NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) (EC:1.6.99.5) bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
NAD(P)H-quinone oxidoreductase subunit K (EC:1.6.99.5)
Tax=CSP1_3_Armatimonadetes
PLM3-1_170_b2_sep16_scaffold_1783_9
CSP1_5_NC10, NC10, Bacteria

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11084..11287
DNA (204bp) protein (68aa)
nuoD; NADH-quinone oxidoreductase subunit D (NADH dehydrogenase I, chain D) (NDH-1, chain D) (EC:1.6.99.5 1.6.5.3) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
NADH dehydrogenase I subunit D (EC:1.6.99.5)
Tax=CSP1_5_NC10
Displaying 9 items

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