ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1506_17

Organism: PLM6_170_b2_sep16_Eisenbacteria_67_7

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 9 / 38
Location: comp(21829..22545)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily protein Tax=mine drainage metagenome RepID=E6PFB2_9ZZZZ bin=16ft_combo_ws3_JS1 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade similarity UNIREF
DB: UNIREF100
  • Identity: 53.5
  • Coverage: 202.0
  • Bit_score: 193
  • Evalue 1.40e-46
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 37.9
  • Coverage: 203.0
  • Bit_score: 122
  • Evalue 1.50e-25
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 53.5
  • Coverage: 202.0
  • Bit_score: 193
  • Evalue 2.00e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 717
TTGGGGTCGCGCGCCCCCGCGCCATCGGGGCCGCACGTGAATTTCGTGAAACCGTCGACCCCGGTGAACCCCTCCAATACCAGGGTGAGAGCTATCGCCGCTGAGCCGCACGCGTCGCCCAGCCGCTCCGACGAGCGTGAGCTGCTCGCGCGCTCCCGCGAAGGCGATGCCAGAGCGTACCGGACACTGGTGGAGCGCTATCAGGGACCGGTCTATCGTCTGGCGTTCCGCATCGTGCGCTCGGAGCGGGACGCGGAGGAGGTGGCGCAGGACGCGTTCGTCCGGGCTTGGGTCGGACTCCGCGAGTTCAGAGGGGATGCCTCGTTCTCGACGTGGATCCACCGCATCGTGTTTCGCCGCGCCCTGGACCGAGCGGCGCTGCTCCGGCGCCGCCGGTTGCGAGAGACGGCCATCGAGGGAATCGACGTCGAGGCGATACCTGCGATGGATCCGCCTCGGGCCAGCGGCGTCGCGGGGGCGGCCGGCGGCGCCGTGTCGCGCGAGGGGCTCCGGCTGGCCCGCCTCCTCGGGACGCTGCCTGAGACGCAGCGCGCCGTGATCGCGCTCTACTATTACGAGGACTACGATGTGAAAGAGATCGCGGGAATACTCGAGATCCCGGAGGGCACCGTGAAGACCCACTTGAGCCGCGCCCGGAGCGCGCTCCGGCGCGGCTGGATGCGCGAATCGCGAGGGGAGACGGACCATGCGCTGTGA
PROTEIN sequence
Length: 239
LGSRAPAPSGPHVNFVKPSTPVNPSNTRVRAIAAEPHASPSRSDERELLARSREGDARAYRTLVERYQGPVYRLAFRIVRSERDAEEVAQDAFVRAWVGLREFRGDASFSTWIHRIVFRRALDRAALLRRRRLRETAIEGIDVEAIPAMDPPRASGVAGAAGGAVSREGLRLARLLGTLPETQRAVIALYYYEDYDVKEIAGILEIPEGTVKTHLSRARSALRRGWMRESRGETDHAL*