ggKbase home page

PLM3-1_170_b2_sep16_scaffold_2297_6

Organism: PLM6_170_b2_sep16_Eisenbacteria_67_7

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 9 / 38
Location: comp(4314..4916)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily protein Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C377D bin=16ft_combo_ws3_JS1 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade similarity UNIREF
DB: UNIREF100
  • Identity: 45.2
  • Coverage: 177.0
  • Bit_score: 129
  • Evalue 3.60e-27
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 40.8
  • Coverage: 184.0
  • Bit_score: 116
  • Evalue 5.30e-24
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 44.3
  • Coverage: 194.0
  • Bit_score: 134
  • Evalue 1.20e-28

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 603
ATGAGCCCCCCGCGGCCTGACTGGTCCGGTCACACCGACGACGAGCTGGTCCGGTTCGTCCGTGGCGGCGAGACCGACGCGTTCGCGGAGCTGGTACGCCGCACGCGGCGGCCAGCCTACCGTCTGGCGCGCCGCATCATGAGGAATCACGAGGACGCGGACGACGTCGTCCAGGAAAGTTACGTGAAGGCCTACCGCGCCCTCGACCGGTTCGTTCCGGGGAAGGCGATGGGGCCATGGCTCCTCACGATCGTCGCCCGCACGGCCCTTTCCGCGATCCGGAAAGGGAAGCGGCGCGCGGCCGCCTCACTCGACGACCCTGGCCCCGACGGCGTCGTCCCGCTTGCCGAAAGGATCGCCGACCCCTCGACCGACCCCGAGGGGCTCGATCGGCGGCTCGAGGTGGAGCGCGCGTTCGCGGGCCTTTCCGAGGAGCACCGCGCGATTCTTGCCCTCCGCGTCGACGGAGATCTCACGTACGCGTCGATCGCCGAGGCGCTCGGGGTGCCGGTGGGAACCGTGATGTCGAGGCTTGCGCGAGCGCGGGAAGCGTTGGTGGAACGAATGAACGAATCGAGAAAGGTCAGCCCCAATGAGCCCTGA
PROTEIN sequence
Length: 201
MSPPRPDWSGHTDDELVRFVRGGETDAFAELVRRTRRPAYRLARRIMRNHEDADDVVQESYVKAYRALDRFVPGKAMGPWLLTIVARTALSAIRKGKRRAAASLDDPGPDGVVPLAERIADPSTDPEGLDRRLEVERAFAGLSEEHRAILALRVDGDLTYASIAEALGVPVGTVMSRLARAREALVERMNESRKVSPNEP*