ggKbase home page

PLM3-1_170_b2_sep16_scaffold_2330

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2330_1
unknown

Not on your lists

comp(33..251)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2330_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1001..1843
DNA (843bp) protein (281aa)
Putative methyltransferase type 11 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG42_NITGG
methyltransferase type 11
Putative methyltransferase type 11 {ECO:0000313|EMBL:AFU58755.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1942..2442
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN51_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84733.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_2330_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

2847..3224
DNA (378bp) protein (126aa)
Putative glyoxalase/bleomycin resistance protein/dioxygenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA5_NITGG
glyoxalase/bleomycin resistance protein/dioxygenase
Putative glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AFU58767.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(3230..4177)
DNA (948bp) protein (316aa)
Putative methyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIE4_NITGG
methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AFU58768.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(4240..5712)
DNA (1473bp) protein (491aa)
Putative FAD linked oxidase-like protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN52_NITGG
FAD linked oxidase-like protein
Putative FAD linked oxidase-like protein {ECO:0000313|EMBL:AFU58769.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_7
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

6223..6516
DNA (294bp) protein (98aa)
Putative uncharacterized protein Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPM3_KORVE bin=RBG2 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=RBG2 organism_group=Chloroflexi
GYD family protein
GYD family protein {ECO:0000313|EMBL:ACZ38256.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_170_b2_sep16_scaffold_2330_8
unknown

Not on your lists

comp(6765..6878)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2330_9
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(6875..7354)
DNA (480bp) protein (160aa)
BNR/Asp-box repeats-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIX2_NITGG
BNR/Asp-box repeats-containing protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM3-1_170_b2_sep16_scaffold_2330_10
unknown

Not on your lists

comp(7612..7818)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2330_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8952..9407
DNA (456bp) protein (152aa)
Putative signal transduction response regulator, receiver domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMC9_NITGG
signal transduction response regulator, receiver domain-containing protein
Putative signal transduction response regulator, receiver domain protein {ECO:0000313|EMBL:AFU57794.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(9507..10295)
DNA (789bp) protein (263aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKE0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59698.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_13
unknown

Not on your lists

10394..10495
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2330_14
unknown

Not on your lists

comp(10502..10891)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2330_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11256..11852)
DNA (597bp) protein (199aa)
UPF0218 protein Ngar_c18380 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBV8_NITGG
hypothetical protein
UPF0218 protein Ngar_c18380 {ECO:0000256|HAMAP-Rule:MF_00590}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11890..12963)
DNA (1074bp) protein (358aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58772.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


13043..13888
DNA (846bp) protein (282aa)
rpoE`; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6)
DNA-directed RNA polymerase, subunit E {ECO:0000313|EMBL:AFU58775.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AFU58775.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase, subunit E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG60_NITGG
PLM3-1_170_b2_sep16_scaffold_2330_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

14084..14944
DNA (861bp) protein (287aa)
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Nicotinate-nucleotide pyrophosphorylase [carboxylating] Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA8_NITGG
PLM3-1_170_b2_sep16_scaffold_2330_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(14941..15885)
DNA (945bp) protein (315aa)
nadA; quinolinate synthase A (EC:2.5.1.72)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Quinolinate synthase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIF0_NITGG
PLM3-1_170_b2_sep16_scaffold_2330_20
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

16300..16740
DNA (441bp) protein (147aa)
aspartate dehydrogenase (EC:1.4.1.21)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
L-aspartate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG64_NITGG
PLM3-1_170_b2_sep16_scaffold_2330_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

16952..17206
DNA (255bp) protein (85aa)
TRAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW5_NITGG
TRAM domain-containing protein
TRAM domain-containing protein {ECO:0000313|EMBL:AFU58781.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_22
unknown

Not on your lists

comp(17257..17442)
DNA (186bp) protein (62aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2330_23
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

17524..17916
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKB0_NITGG
heme/copper-type cytochrome/quinol oxidases, subunit 2
Heme/copper-type cytochrome/quinol oxidases, subunit 2 {ECO:0000313|EMBL:AIF83757.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_2330_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17967..19088)
DNA (1122bp) protein (374aa)
Small GTP-binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIF3_NITGG
small GTP-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:AFU58783.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2330_25
unknown

Not on your lists

comp(19426..19998)
DNA (573bp) protein (191aa)

This feature has no annotations

Displaying 25 items

View Taxonomy