ggKbase home page

PLM4_32_coex_redo_sep16_scaffold_477

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_477_1
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..980)
DNA (978bp) protein (326aa)
acetyl-CoA carboxylase Tax=Salisaeta longa RepID=UPI0003B6DD82
acetyl-CoA carboxylase, biotin carboxylase subunit
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
PLM4_32_coex_redo_sep16_scaffold_477_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(977..4186)
DNA (3210bp) protein (1070aa)
Peptidase S41 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NRH1_GRAMM
peptidase S41
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_coex_redo_sep16_scaffold_477_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4244..5446
DNA (1203bp) protein (401aa)
Aminotransferase class I and II Tax=Caldithrix abyssi DSM 13497 RepID=H1XU37_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
class I and II aminotransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_coex_redo_sep16_scaffold_477_4
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5443..6297)
DNA (855bp) protein (285aa)
Putative heptosyltransferase bin=GWC2_Ignavibacteria_56_12 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
glycosyl transferase family 9
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM4_32_coex_redo_sep16_scaffold_477_5
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6442..7407)
DNA (966bp) protein (322aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39X61_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE02855.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_32_coex_redo_sep16_scaffold_477_6
unknown

Not on your lists

comp(7506..7916)
DNA (411bp) protein (137aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_477_7
unknown

Not on your lists

8870..9598
DNA (729bp) protein (243aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_477_8
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9603..10613)
DNA (1011bp) protein (337aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:ACX52992.1}; EC=2.5.1.54 {ECO:0000313|EMBL:ACX52992.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R9L3_AMMDK
PLM4_32_coex_redo_sep16_scaffold_477_9
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10610..11383)
DNA (774bp) protein (258aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Tryptophan synthase alpha chain Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQN5_TISMK
trpA; tryptophan synthase subunit alpha
PLM4_32_coex_redo_sep16_scaffold_477_10
Kocuria palustris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11380..13308)
DNA (1929bp) protein (643aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|SAAS:SAAS00046689}; EC=4.1.1.48 {ECO:0000256|SAAS:SAAS00046705};; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria palustris PEL.;"
trpC_trpB; bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta (EC:4.1.1.48 4.2.1.20)
Tryptophan synthase beta chain Tax=Kocuria palustris PEL RepID=M2WH21_9MICC
PLM4_32_coex_redo_sep16_scaffold_477_11
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13301..14323)
DNA (1023bp) protein (341aa)
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000255|HAMAP-Rule:MF_00211};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
Anthranilate phosphoribosyltransferase Tax=Desulforudis audaxviator (strain MP104C) RepID=TRPD_DESAP
PLM4_32_coex_redo_sep16_scaffold_477_12
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14320..14901)
DNA (582bp) protein (194aa)
Glutamine amidotransferase of anthranilate synthase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDF1_AMMDK
glutamine amidotransferase of anthranilate synthase
Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:ACX52278.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
PLM4_32_coex_redo_sep16_scaffold_477_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14898..16187)
DNA (1290bp) protein (430aa)
Anthranilate synthase component I Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHH6_RHOM4
anthranilate synthase component I
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_coex_redo_sep16_scaffold_477_14
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16395..17183)
DNA (789bp) protein (263aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
Enoyl-CoA hydratase/isomerase Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L6T3_9BACT
Enoyl-CoA hydratase {ECO:0000313|EMBL:EYF08960.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
PLM4_32_coex_redo_sep16_scaffold_477_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(17180..18235)
DNA (1056bp) protein (352aa)
isocitrate dehydrogenase (EC:1.1.1.41)
Isocitrate dehydrogenase Tax=Sorangium cellulosum So0157-2 RepID=S4XK65_SORCE
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_coex_redo_sep16_scaffold_477_16
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(18244..18627)
DNA (384bp) protein (128aa)
Putative integral membrane protein Tax=Thermus thermophilus JL-18 RepID=H9ZTA1_THETH
hypothetical protein
Putative integral membrane protein {ECO:0000313|EMBL:AFH39561.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus JL-18.;"
PLM4_32_coex_redo_sep16_scaffold_477_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18624..18797)
DNA (174bp) protein (58aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_32_coex_redo_sep16_scaffold_477_18
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(18799..19251)
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NR37_GRAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEU35022.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
PLM4_32_coex_redo_sep16_scaffold_477_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


comp(19255..19707)
DNA (453bp) protein (151aa)
50S ribosomal protein L9 Tax=Solibacter usitatus (strain Ellin6076) RepID=RL9_SOLUE
rplI; 50S ribosomal protein L9
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_32_coex_redo_sep16_scaffold_477_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(19721..20023)
DNA (303bp) protein (101aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003735E91
rpsR; 30S ribosomal protein S18
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_477_21
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


comp(20023..20547)
DNA (525bp) protein (175aa)
30S ribosomal protein S6 Tax=Koribacter versatilis (strain Ellin345) RepID=RS6_KORVE
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000255|HAMAP-Rule:MF_00360}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_32_coex_redo_sep16_scaffold_477_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(20605..21189)
DNA (585bp) protein (195aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase Tax=Chloroflexus RepID=PTH_CHLAA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_coex_redo_sep16_scaffold_477_23
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


comp(21186..21896)
DNA (711bp) protein (237aa)
50S ribosomal protein L25 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QR2_SOLUE
50S ribosomal protein L25
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_32_coex_redo_sep16_scaffold_477_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(21910..22851)
DNA (942bp) protein (314aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Ribose-phosphate pyrophosphokinase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHW0_KORVE
ribose-phosphate pyrophosphokinase
PLM4_32_coex_redo_sep16_scaffold_477_25
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(22848..23747)
DNA (900bp) protein (300aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
Tax=RBG_16_Aminicenantes_66_30_curated
PLM4_32_coex_redo_sep16_scaffold_477_26
unknown

Not on your lists

comp(23744..24331)
DNA (588bp) protein (196aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_477_27
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(24328..26283)
DNA (1956bp) protein (652aa)
Flp pilus assembly protein TadD, contains TPR repeats Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGJ0_CHLTF
Flp pilus assembly protein TadD, contains TPR repeats
Flp pilus assembly protein TadD, contains TPR repeats {ECO:0000313|EMBL:AEP10950.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_32_coex_redo_sep16_scaffold_477_28
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(26280..27455)
DNA (1176bp) protein (392aa)
C-terminal processing peptidase {ECO:0000313|EMBL:CDM64773.1}; EC=3.4.21.102 {ECO:0000313|EMBL:CDM64773.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidase S41 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B7065E
periplasmic protease
PLM4_32_coex_redo_sep16_scaffold_477_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(27514..28593)
DNA (1080bp) protein (360aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M23B
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_coex_redo_sep16_scaffold_477_30
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(28593..30839)
DNA (2247bp) protein (749aa)
Uncharacterized protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9Z3_SINAD
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
Displaying items 1-30 of 33 in total

View Taxonomy