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PLM3_127_b2_sep16_scaffold_2284

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2284_1
Rhodopirellula sp. SWK7, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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46..1692
DNA (1647bp) protein (549aa)
Uncharacterized protein Tax=Rhodopirellula sp. SWK7 RepID=M5T6N6_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EMI44912.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sp. SWK7.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2284_trna_2
unknown

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comp(1781..1853)
DNA (73bp)
transferRNA Asn
PLM3_127_b2_sep16_scaffold_2284_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(1974..2723)
DNA (750bp) protein (250aa)
hypothetical protein; K09763 hypothetical protein bin=bin1_lowGC species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

2908..3774
DNA (867bp) protein (289aa)
RNA polymerase sigma-B factor; K03089 RNA polymerase sigma-32 factor bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
RNA polymerase sigma-B factor
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists


comp(3786..7439)
DNA (3654bp) protein (1218aa)
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] bin=bin1_lowGC species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
alanyl-tRNA synthetase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(7671..8894)
DNA (1224bp) protein (408aa)
adenylate/guanylate cyclase with integral membrane sensor bin=bin1_lowGC species=Leptospira santarosai genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin1_lowGC organism_group=Unknown_CP
adenylate/guanylate cyclase with integral membrane sensor
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists


comp(9219..9479)
DNA (261bp) protein (87aa)
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
rpmA; 50S ribosomal protein L27
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists


comp(9492..9806)
DNA (315bp) protein (105aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 bin=bin1_lowGC species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
50S ribosomal protein L21
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9931..10467)
DNA (537bp) protein (179aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] bin=bin1_lowGC species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin1_lowGC organism_group=Unknown_CP
2'-5' RNA ligase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(10536..11801)
DNA (1266bp) protein (422aa)
WD40 domain-containing protein; K03641 TolB protein bin=bin1_lowGC species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
tolB; protein tolB
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_10
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(11900..12496)
DNA (597bp) protein (199aa)
HNH endonuclease domain-containing protein bin=bin1_lowGC species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
HNH endonuclease domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

12627..12779
DNA (153bp) protein (51aa)
id=14426502 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_12
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

12779..13549
DNA (771bp) protein (257aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=bin1_lowGC organism_group=Unknown_CP
prolipoprotein diacylglyceryl transferase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_13
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

13616..15178
DNA (1563bp) protein (521aa)
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
lnt; apolipoprotein N-acyltransferase (EC:2.3.1.-)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(15155..16531)
DNA (1377bp) protein (459aa)
hisC1; histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] bin=bin1_lowGC species=Methylomicrobium buryatense genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
histidinol-phosphate aminotransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(16602..17891)
DNA (1290bp) protein (430aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23); K00013 histidinol dehydrogenase [EC:1.1.1.23] bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
hisD; bifunctional histidinal dehydrogenase/histidinol dehydrogenase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_16
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18115..18399
DNA (285bp) protein (95aa)
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
hupB; HU-beta DNA-binding protein
Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
PLM3_127_b2_sep16_scaffold_2284_17

Not on your lists

19133..19702
DNA (570bp) protein (190aa)
hypothetical protein Tax=Orenia marismortui RepID=UPI000367ABA1
Marine sediment metagenome DNA, contig: S03H2_L02754 {ECO:0000313|EMBL:GAH33092.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
integrase family protein
PLM3_127_b2_sep16_scaffold_2284_trna_1
unknown

Not on your lists

comp(20031..20105)
DNA (75bp)
transferRNA Arg
PLM3_127_b2_sep16_scaffold_2284_18
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(20209..21966)
DNA (1758bp) protein (586aa)
phosphoenolpyruvate-protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] bin=GWC2_NOV_55_46 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_19
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(21963..22244)
DNA (282bp) protein (94aa)
Phosphocarrier protein HPr bin=GWC2_Deltaproteobacteria_56_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
ptsH; phosphocarrier protein HPr
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_20
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(22304..23140)
DNA (837bp) protein (279aa)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_21
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(23112..24905)
DNA (1794bp) protein (598aa)
Tetratricopeptide TPR_2 repeat protein bin=GWB2_Proteobacteria_55_19 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_22
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(24906..26357)
DNA (1452bp) protein (484aa)
Transglutaminase-like protein bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
transglutaminase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_23
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

26456..27580
DNA (1125bp) protein (375aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
menaquinone biosynthesis protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_2284_24
unknown

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comp(27602..28123)
DNA (522bp) protein (174aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2284_25
unknown

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comp(28124..28513)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2284_26
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(28662..30140)
DNA (1479bp) protein (493aa)
glgA-2; glycogen synthase; K00703 starch synthase [EC:2.4.1.21] bin=bin1_lowGC species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
glgA-2; glycogen synthase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_27
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(30264..30911)
DNA (648bp) protein (216aa)
2-dehydro-3-deoxyphosphogluconate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] bin=bin1_lowGC species=Thermoanaerobacter wiegelii genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
Entner-Doudoroff aldolase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2284_28
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

31176..31628
DNA (453bp) protein (151aa)
furR1; FUR family transcriptional regulator; K09825 Fur family transcriptional regulator, peroxide stress response regulator bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
furR1; FUR family transcriptional regulator
Tax=CSP1_2_Dadabacteria
Displaying items 1-30 of 31 in total

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