ggKbase home page

PLM3_127_b2_sep16_scaffold_4484

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4484_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1..1542
DNA (1542bp) protein (514aa)
Molybdopterin oxidoreductase Fe4S4 region bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
Molybdopterin oxidoreductase Fe4S4 region
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1564..2613
DNA (1050bp) protein (350aa)
nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I, chain H) (NDH-1, chain H) (EC:1.6.5.3 1.6.99.5)
NADH dehydrogenase subunit H bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(2663..3856)
DNA (1194bp) protein (398aa)
PaaJ; acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] bin=bin1_lowGC species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(3980..5143)
DNA (1164bp) protein (388aa)
class V aminotransferase bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
class V aminotransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_5
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

5265..5828
DNA (564bp) protein (188aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_4484_6

Not on your lists

6165..7265
DNA (1101bp) protein (367aa)
UBA/THIF-type NAD/FAD-binding protein Tax=uncultured bacterium W5-15b RepID=H9BWZ7_9BACT
UBA/THIF-type NAD/FAD-binding protein {ECO:0000313|EMBL:AFD03319.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium W5-15b.;"
molybdopterin biosynthesis protein MoeB
PLM3_127_b2_sep16_scaffold_4484_trna_2
unknown

Not on your lists

comp(7275..7359)
DNA (85bp)
transferRNA Leu
PLM3_127_b2_sep16_scaffold_4484_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

7490..7744
DNA (255bp) protein (85aa)
cold-shock DNA-binding protein family; K03704 cold shock protein (beta-ribbon, CspA family) bin=bin1_lowGC species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
cold-shock DNA-binding domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(7827..8369)
DNA (543bp) protein (181aa)
phosphohydrolase bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
phosphohydrolase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(8403..9245)
DNA (843bp) protein (281aa)
Enoyl-CoA hydratase/carnithine racemase Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4BZT1_DESTA
enoyl-CoA hydratase/carnithine racemase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_4484_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

9379..9825
DNA (447bp) protein (149aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
cytochrome c family protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_11
unknown

Not on your lists

9828..9989
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4484_trna_1
unknown

Not on your lists

10187..10276
DNA (90bp)
transferRNA Ser
PLM3_127_b2_sep16_scaffold_4484_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

10418..11902
DNA (1485bp) protein (495aa)
dnaX; DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] bin=bin1_lowGC species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

12000..12323
DNA (324bp) protein (108aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

12326..12931
DNA (606bp) protein (202aa)
recR; Recombination protein; K06187 recombination protein RecR bin=bin1_lowGC species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
recombination protein RecR
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

13148..13597
DNA (450bp) protein (150aa)
maoC; MaoC family proteine bin=bin1_lowGC species=Pseudomonas fragi genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
MaoC-related acyl dehydratase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(13710..15089)
DNA (1380bp) protein (460aa)
sigma-54-dependent transcriptional response regulator bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
sigma-54-dependent transcriptional response regulator
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_17
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(15154..16503)
DNA (1350bp) protein (450aa)
ATPase ATP-binding domain-containing protein; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] bin=bin1_lowGC species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=bin1_lowGC organism_group=Unknown_CP
ATPase ATP-binding domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4484_18
unknown

Not on your lists

comp(16754..17128)
DNA (375bp) protein (125aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4484_19
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17760..18719
DNA (960bp) protein (320aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKB1_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b2_sep16_scaffold_4484_20
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19002..19892)
DNA (891bp) protein (297aa)
Uncharacterized protein Tax=Paenibacillus mucilaginosus K02 RepID=I0BDX9_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH60576.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
Displaying 22 items

View Taxonomy