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PLM3_127_b2_sep16_scaffold_1679

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1679_1
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(3..404)
DNA (402bp) protein (134aa)
Transcriptional regulatory protein pilR bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
pilR; transcriptional regulatory protein pilR
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_2
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(419..2059)
DNA (1641bp) protein (547aa)
Multi-sensor signal transduction histidine kinase bin=GWA2_OP3_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
multi-sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_3
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(2169..3383)
DNA (1215bp) protein (405aa)
Type IV pilus inner membrane protein PilC Tax=Geobacter sulfurreducens RepID=D7AIS8_GEOSK
pilus assembly protein PilC
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_4
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(3427..4521)
DNA (1095bp) protein (365aa)
Twitching motility protein Tax=Anaeromyxobacter sp. (strain K) RepID=B4UCS2_ANASK
twitching motility protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_5
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(4532..6286)
DNA (1755bp) protein (585aa)
Type IV pilus biogenesis ATPase PilB bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
type IV-A pilus assembly ATPase PilB
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_6
unknown

Not on your lists

comp(6447..6560)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1679_7
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

7032..7919
DNA (888bp) protein (296aa)
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PBZ7_DEFDS
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_8
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

7904..10027
DNA (2124bp) protein (708aa)
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=SYGB_GEOUR
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

11514..12713
DNA (1200bp) protein (400aa)
ppdK; pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase Tax=Candidatus Nitrospira defluvii RepID=D8PDR0_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_10
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12845..13654)
DNA (810bp) protein (270aa)
Metallophosphoesterase bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
metallophosphoesterase
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
PLM3_127_b2_sep16_scaffold_1679_11
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(13715..14962)
DNA (1248bp) protein (416aa)
Ribonuclease Y bin=GWC2_Deltaproteobacteria_42_51 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
phosphodiesterase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_12
unknown

Not on your lists

comp(14980..15195)
DNA (216bp) protein (72aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1679_13
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(15197..15892)
DNA (696bp) protein (232aa)
5-formyltetrahydrofolate cyclo-ligase Tax=Clostridium beijerinckii RepID=UPI00030118F9
5-formyltetrahydrofolate cyclo-ligase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_14
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(15837..16193)
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Clostridium sp. CAG:265 RepID=R6KVJ3_9CLOT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_15
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

16511..17581
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ABC3_THEID
peptide chain release factor 1
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_16
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

17641..18453
DNA (813bp) protein (271aa)
cytochrome c biogenesis protein bin=bin5_DeltaP species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
cytochrome C biogenesis protein ResC
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_17
unknown

Not on your lists

18801..19043
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1679_18
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

19109..19489
DNA (381bp) protein (127aa)
PhaR Tax=Kurthia massiliensis RepID=UPI000289BDE0
PHA synthase subunit PhaR
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_19
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

19619..20686
DNA (1068bp) protein (356aa)
poly(R)-hydroxyalkanoic acid synthase subunit PhaC bin=bin1_lowGC species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_20
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(20780..21538)
DNA (759bp) protein (253aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] bin=bin1_lowGC species=Paenibacillus popilliae genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
fabG_4; 3-oxoacyl-[acyl-carrier-protein] reductase FabG (EC:1.1.1.100)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1679_21
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

21766..22641
DNA (876bp) protein (292aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] bin=bin7_NC10_sister species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin7_NC10_sister organism_group=NC10
diaminopimelate epimerase (EC:5.1.1.7)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_22
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

22658..23905
DNA (1248bp) protein (416aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase (MTA/SAH deaminase) (EC:3.5.4.28)
Putative 5-methylthioadenosine/S-adenosylhomocysteine deaminase (MTA/SAH deaminase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIW5_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_23
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

23907..24971
DNA (1065bp) protein (355aa)
Uncharacterized protein Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A5E7_DESDJ
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1679_24
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(24968..25801)
DNA (834bp) protein (278aa)
1,4-dihydroxy-6-naphtoate synthase {ECO:0000256|HAMAP-Rule:MF_00996}; EC=4.1.-.- {ECO:0000256|HAMAP-Rule:MF_00996};; Menaquinone biosynthetic enzyme MqnD {ECO:0000256|HAMAP-Rule:MF_00996}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 /; Av18).;"
Putative uncharacterized protein Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDU4_ARCPA
hypothetical protein
PLM3_127_b2_sep16_scaffold_1679_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(25995..26792)
DNA (798bp) protein (266aa)
Uncharacterized protein bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3_127_b2_sep16_scaffold_1679_26
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(26815..27573)
DNA (759bp) protein (253aa)
hisF; imidazoleglycerol phosphate synthase cyclase subunit
Imidazole glycerol phosphate synthase subunit HisF bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3_127_b2_sep16_scaffold_1679_27
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(27662..28384)
DNA (723bp) protein (241aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFZ6_9FIRM
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3_127_b2_sep16_scaffold_1679_28
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28385..28984)
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Desulfococcus multivorans DSM 2059 RepID=S7U765_DESML
Uncharacterized protein {ECO:0000313|EMBL:EPR44985.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1679_29
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29085..29549
DNA (465bp) protein (155aa)
Uncharacterized protein family UPF0310 Tax=Sphingobacterium sp. (strain 21) RepID=F4C488_SPHS2
hypothetical protein
Uncharacterized protein family UPF0310 {ECO:0000313|EMBL:ADZ80078.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
PLM3_127_b2_sep16_scaffold_1679_30
Methylococcaceae bacterium Sn10-6, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29762..30340)
DNA (579bp) protein (193aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI000360A50C
Uncharacterized protein {ECO:0000313|EMBL:KJV06339.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae.;" source="Methylococcaceae bacterium Sn10-6.;"
hypothetical protein
Displaying items 1-30 of 43 in total

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