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PLM3_127_b2_sep16_scaffold_1281

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1281_1
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(262..957)
DNA (696bp) protein (232aa)
Monofunctional biosynthetic peptidoglycan transglycosylase Tax=Sulfuricella denitrificans skB26 RepID=S6A9F9_9PROT
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
Tax=RBG_16_Betaproteobacteria_56_24_curated
PLM3_127_b2_sep16_scaffold_1281_2
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(954..1784)
DNA (831bp) protein (277aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z4T4_9RHOO
PLM3_127_b2_sep16_scaffold_1281_3
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1781..2707)
DNA (927bp) protein (309aa)
TonB family protein Tax=Sulfuricella denitrificans skB26 RepID=S6AZY6_9PROT
TonB family protein
Tax=RBG_16_Gallionellales_57_15_curated
PLM3_127_b2_sep16_scaffold_1281_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2764..4614)
DNA (1851bp) protein (617aa)
Exoribonuclease II Tax=Nitrosospira sp. APG3 RepID=M5DGG0_9PROT
ribonuclease II
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1281_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4691..5254)
DNA (564bp) protein (188aa)
esterase Tax=Thiobacillus thioparus RepID=UPI0003607B20
esterase
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_1281_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5372..6715)
DNA (1344bp) protein (448aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Tax=Sulfuricella denitrificans skB26 RepID=S6A9G4_9PROT
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase {ECO:0000313|EMBL:GAO36936.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
PLM3_127_b2_sep16_scaffold_1281_7
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6992..7885)
DNA (894bp) protein (298aa)
hypothetical protein Tax=Deinococcus apachensis RepID=UPI00036ACBC3
dhlA; haloalkane dehalogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_1281_8
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7898..9076)
DNA (1179bp) protein (393aa)
Putative uncharacterized protein bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
PLM3_127_b2_sep16_scaffold_1281_9
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9155..9934
DNA (780bp) protein (260aa)
short chain dehydrogenase (EC:1.-.-.-)
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR90775.1}; EC=1.-.-.- {ECO:0000313|EMBL:ABR90775.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
Uncharacterized conserved protein Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T3M9_JANMA
PLM3_127_b2_sep16_scaffold_1281_10

Not on your lists

9936..10358
DNA (423bp) protein (141aa)
Putative Dihydroneopterin aldolase {ECO:0000313|EMBL:CBH99111.1}; EC=4.1.2.25 {ECO:0000313|EMBL:CBH99111.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative Dihydroneopterin aldolase Tax=mine drainage metagenome RepID=E6PW04_9ZZZZ
dihydroneopterin aldolase
PLM3_127_b2_sep16_scaffold_1281_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10359..11249
DNA (891bp) protein (297aa)
tRNA 2-thiocytidine biosynthesis protein TtcA Tax=Nitrosospira sp. APG3 RepID=M5DGH8_9PROT
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850, ECO:0000313|EMBL:KIO50351.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
tRNA 2-thiocytidine biosynthesis protein TtcA
PLM3_127_b2_sep16_scaffold_1281_12
Marinobacter adhaerens, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11246..11671
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Marinobacter adhaerens (strain HP15) RepID=E4PNP9_MARAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP97543.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter adhaerens (strain HP15).;"
PLM3_127_b2_sep16_scaffold_1281_13
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11668..12090
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Ralstonia sp. PBA RepID=I9BS93_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ02636.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1281_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12319..12987)
DNA (669bp) protein (223aa)
Male sterility domain Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRE5_PARL1
hypothetical protein
Male sterility domain {ECO:0000313|EMBL:ABS62478.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PLM3_127_b2_sep16_scaffold_1281_15
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13033..13896)
DNA (864bp) protein (288aa)
Peptidase M48 Ste24p Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLU1_SIDLE
peptidase M48 Ste24p
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
PLM3_127_b2_sep16_scaffold_1281_16
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13893..14420)
DNA (528bp) protein (176aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTW3_SIDLE
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
PLM3_127_b2_sep16_scaffold_1281_17
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14433..16262)
DNA (1830bp) protein (610aa)
Adenylate/guanylate cyclase with Chase sensor Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTW4_SIDLE
adenylate/guanylate cyclase with Chase sensor
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
PLM3_127_b2_sep16_scaffold_1281_18
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16411..17265)
DNA (855bp) protein (285aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase Tax=Sulfuricella denitrificans skB26 RepID=S6AEP9_9PROT
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_1281_19
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17663..18769)
DNA (1107bp) protein (369aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
Adenosylhomocysteinase Tax=Methyloversatilis universalis FAM5 RepID=F5RFA1_9RHOO
s-adenosyl-L-homocysteine hydrolase
PLM3_127_b2_sep16_scaffold_1281_20
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19405..20586)
DNA (1182bp) protein (394aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
S-adenosylmethionine synthetase Tax=Pandoraea RepID=V5UGB4_9BURK
PLM3_127_b2_sep16_scaffold_1281_21
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20690..21559
DNA (870bp) protein (290aa)
Lipid A biosynthesis acyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6B0A2_9PROT
lipid A biosynthesis acyltransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1281_22
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21559..22428
DNA (870bp) protein (290aa)
Lipid A biosynthesis acyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6B0A2_9PROT
lipid A biosynthesis acyltransferase
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:BAN34157.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_1281_23
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22474..23001
DNA (528bp) protein (176aa)
GCN5-related N-acetyltransferase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPB9_ACCPU
GCN5-like N-acetyltransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1281_24
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23190..24020
DNA (831bp) protein (277aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase Tax=Thauera sp. 63 RepID=N6X022_9RHOO
PLM3_127_b2_sep16_scaffold_1281_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24034..24678
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AEG0_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1281_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24679..25530
DNA (852bp) protein (284aa)
Tyrosine recombinase XerC Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CU53_SIDLE
tyrosine recombinase XerC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying 26 items

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