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PLM3_127_b2_sep16_scaffold_513

Search features with annotation key words

Displaying items 61-83 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_513_58
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(56684..57001)
DNA (318bp) protein (106aa)
Ribosome-binding ATPase YchF Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GDH4_NITSI
GTP-binding protein YchF
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
PLM3_127_b2_sep16_scaffold_513_59
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56992..57840)
DNA (849bp) protein (283aa)
Ribosome-binding ATPase YchF Tax=Thauera phenylacetica B4P RepID=N6ZWX3_9RHOO
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
GTP-dependent nucleic acid-binding protein EngD
PLM3_127_b2_sep16_scaffold_513_60
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57911..58477)
DNA (567bp) protein (189aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
Peptidyl-tRNA hydrolase Tax=Nitrosomonas sp. AL212 RepID=F9ZJA8_9PROT
PLM3_127_b2_sep16_scaffold_513_61
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(58559..59308)
DNA (750bp) protein (250aa)
50S ribosomal protein L25 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GDH2_NITSI
50S ribosomal protein L25
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_513_62
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59617..60567)
DNA (951bp) protein (317aa)
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Ribose-phosphate pyrophosphokinase Tax=Sulfuricella denitrificans skB26 RepID=S6B7L0_9PROT
PLM3_127_b2_sep16_scaffold_513_trna_1
unknown

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comp(60703..60774)
DNA (72bp)
transferRNA Gln
PLM3_127_b2_sep16_scaffold_513_63
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60781..61650)
DNA (870bp) protein (290aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Sulfuricella denitrificans skB26 RepID=S6ADF4_9PROT
PLM3_127_b2_sep16_scaffold_513_64
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61647..62222)
DNA (576bp) protein (192aa)
Outer membrane lipoprotein LolB bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
outer-membrane lipoprotein lolB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_513_65
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62232..63938)
DNA (1707bp) protein (569aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AB05_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_513_66
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64317..65282
DNA (966bp) protein (322aa)
ABC transporter related protein Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H3I7_METFK
ABC transporter related
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_513_67
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65279..66022
DNA (744bp) protein (248aa)
ABC-2 type transport system permease Tax=Sulfuricella denitrificans skB26 RepID=S6B7L7_9PROT
ABC-2 type transport system permease
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_513_68
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66019..67368
DNA (1350bp) protein (450aa)
ABC transporter Tax=Sulfuricella denitrificans skB26 RepID=S6ADF6_9PROT
ABC transporter {ECO:0000313|EMBL:GAO36603.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
ABC transporter
PLM3_127_b2_sep16_scaffold_513_69
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67365..68222
DNA (858bp) protein (286aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6ANI3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO36602.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_513_70
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68232..69047
DNA (816bp) protein (272aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase Tax=Sulfuricella denitrificans skB26 RepID=S6AB07_9PROT
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_513_71
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69327..71078
DNA (1752bp) protein (584aa)
Glucose dehydrogenase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRJ0_9BURK
Glucose dehydrogenase {ECO:0000313|EMBL:EHR72249.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
alcohol dehydrogenase
PLM3_127_b2_sep16_scaffold_513_72
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71238..71600
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D7L5_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL07512.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
PLM3_127_b2_sep16_scaffold_513_73
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71597..72400
DNA (804bp) protein (268aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRK2_9BURK
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EHR72247.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_513_74
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72419..72685)
DNA (267bp) protein (89aa)
ferredoxin Tax=Azoarcus toluclasticus RepID=UPI00036580FD
fdx; ferredoxin protein
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
PLM3_127_b2_sep16_scaffold_513_75
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72693..73184)
DNA (492bp) protein (164aa)
Phosphopantetheine adenylyltransferase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJK6_AZOSU
pantetheine-phosphate adenylyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_513_76
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73181..73732)
DNA (552bp) protein (184aa)
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 Tax=Nitrosospira sp. APG3 RepID=M5DFG2_9PROT
methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_513_77
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73833..75200)
DNA (1368bp) protein (456aa)
Peptidase M16 domain protein Tax=Methylotenera sp. (strain 301) RepID=D7DKG7_METS0
peptidase M16 domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_513_78
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75190..76575)
DNA (1386bp) protein (462aa)
FIG015547: peptidase, M16 family Tax=Nitrosospira sp. APG3 RepID=M5DHP8_9PROT
peptidase M16-like protein
FIG015547: peptidase, M16 family {ECO:0000313|EMBL:CCU61898.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PLM3_127_b2_sep16_scaffold_513_79
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76630..77565
DNA (936bp) protein (312aa)
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
signal recognition particle-docking protein FtsY
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying items 61-83 of 83 in total

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