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PLM1_100_b1_sep16_scaffold_214

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_214_1
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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comp(131..1207)
-----------------
DNA (1077bp)
protein (359aa)
L-allo-threonine aldolase (EC:4.1.2.-)
L-allo-threonine aldolase {ECO:0000313|EMBL:ACM06111.1}; EC=4.1.2.- {ECO:0000313|EMBL:ACM06111.1};; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
L-allo-threonine aldolase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1Y4_THERP
PLM1_100_b1_sep16_scaffold_214_2
unknown

Not on your lists

comp(1207..1488)
-----------------
DNA (282bp)
protein (94aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_214_3
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(1488..2981)
-----------------
DNA (1494bp)
protein (498aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA).;"
Probable glycine dehydrogenase (decarboxylating) subunit 2 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BYX9_ANAMD
glycine cleavage system protein P
PLM1_100_b1_sep16_scaffold_214_4
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(2978..4312)
-----------------
DNA (1335bp)
protein (445aa)
glycine dehydrogenase subunit alpha (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SL72_THEM7
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_214_5
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(4309..4704)
-----------------
DNA (396bp)
protein (132aa)
Glycine cleavage system H protein Tax=Patulibacter medicamentivorans RepID=H0E911_9ACTN
glycine cleavage system protein H
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_214_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4704..5732)
-----------------
DNA (1029bp)
protein (343aa)
Aminomethyltransferase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HDC7_ANADF
gcvT; glycine cleavage system aminomethyltransferase T
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_214_7
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(5874..7214)
-----------------
DNA (1341bp)
protein (447aa)
tryptophanase (EC:4.1.99.1)
Tryptophanase {ECO:0000256|HAMAP-Rule:MF_00544, ECO:0000256|SAAS:SAAS00048909}; EC=4.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00544, ECO:0000256|SAAS:SAAS00048909};; L-tryptophan indole-lyase {ECO:0000256|HAMAP-Rule:MF_00544}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
Tryptophanase Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NKC8_MARHT
PLM1_100_b1_sep16_scaffold_214_8
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(7272..8354)
-----------------
DNA (1083bp)
protein (361aa)
Cell division protein FtsZ Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVX7_RUBXD
cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_100_b1_sep16_scaffold_214_9
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(8471..9214)
-----------------
DNA (744bp)
protein (248aa)
Polypeptide-transport-associated domain protein FtsQ-type Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9Y1_ATOPD
Polypeptide-transport-associated domain-containing protein FtsQ-type
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_214_10
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(9246..10127)
-----------------
DNA (882bp)
protein (294aa)
UDP-N-acetylenolpyruvoylglucosamine reductase Tax=Thermobrachium celere DSM 8682 RepID=R7RSN7_9CLOT
UDP-N-acetylenolpyruvoylglucosamine reductase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_214_11
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(10124..11326)
-----------------
DNA (1203bp)
protein (401aa)
UDP-N-acetylmuramate--alanine ligase Tax=Patulibacter americanus RepID=UPI0003B662D2
UDP-N-acetylmuramate--L-alanine ligase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_214_12
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(11307..12230)
-----------------
DNA (924bp)
protein (308aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C1_CONWI
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_214_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12247..13500)
-----------------
DNA (1254bp)
protein (418aa)
Cell division protein FtsW Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C2_CONWI
cell division protein FtsW
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_214_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13497..14744)
-----------------
DNA (1248bp)
protein (416aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C3_CONWI
UDP-N-acetylmuramoylalanine--D-glutamate ligase
PLM1_100_b1_sep16_scaffold_214_15
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(14734..15756)
-----------------
DNA (1023bp)
protein (341aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase Tax=Patulibacter medicamentivorans RepID=H0E559_9ACTN
PLM1_100_b1_sep16_scaffold_214_16
BJP_08E140C01_Actinomycetales_67_18, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(15766..17076)
-----------------
DNA (1311bp)
protein (437aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00037713AD
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
Tax=BJP_08E140C01_Actinomycetales_67_18
PLM1_100_b1_sep16_scaffold_214_17
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(17249..18664)
-----------------
DNA (1416bp)
protein (472aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C5_CONWI
UDP-N-acetylmuramyl tripeptide synthetase
PLM1_100_b1_sep16_scaffold_214_18
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(18726..20414)
-----------------
DNA (1689bp)
protein (563aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:ADB52192.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ADB52192.1};; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Peptidoglycan glycosyltransferase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C6_CONWI
PLM1_100_b1_sep16_scaffold_214_19
unknown

Not on your lists

comp(20411..20806)
-----------------
DNA (396bp)
protein (132aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_214_20
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(20813..21775)
-----------------
DNA (963bp)
protein (321aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Ribosomal RNA small subunit methyltransferase H Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C8_CONWI
S-adenosyl-methyltransferase MraW
PLM1_100_b1_sep16_scaffold_214_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21741..22175)
-----------------
DNA (435bp)
protein (145aa)
Protein MraZ Tax=Roseburia RepID=C7G7X8_9FIRM
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
protein MraZ
PLM1_100_b1_sep16_scaffold_214_22
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

22269..22415
-----------------
DNA (147bp)
protein (49aa)
glyoxalase Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000381F3A2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF69722.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY20341.;"
PLM1_100_b1_sep16_scaffold_214_23
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22401..23225)
-----------------
DNA (825bp)
protein (275aa)
PfkB domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCP4_CONWI
PfkB domain-containing protein
Tax=CG_Delta_07
PLM1_100_b1_sep16_scaffold_214_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

23270..23734
-----------------
DNA (465bp)
protein (155aa)
hypothetical protein Tax=Cellulomonas sp. JC225 RepID=UPI00037E7B18
RNA polymerase sigma-E factor
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_100_b1_sep16_scaffold_214_25
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23731..24294
-----------------
DNA (564bp)
protein (188aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
Methylated-DNA--protein-cysteine methyltransferase Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C5F5_BEUC1
methylated-DNA--protein-cysteine methyltransferase
PLM1_100_b1_sep16_scaffold_214_26
unknown

Not on your lists

comp(24291..24896)
-----------------
DNA (606bp)
protein (202aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_214_27
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(24954..25310)
-----------------
DNA (357bp)
protein (119aa)
Cupin Tax=Natronococcus jeotgali DSM 18795 RepID=L9WMI4_9EURY
Cupin {ECO:0000313|EMBL:ELY50597.1}; species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus jeotgali DSM 18795.;"
Cupin 2 barrel domain-containing protein
PLM1_100_b1_sep16_scaffold_214_28
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(25303..26790)
-----------------
DNA (1488bp)
protein (496aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ADB50282.1}; EC=3.5.2.9 {ECO:0000313|EMBL:ADB50282.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
5-oxoprolinase (ATP-hydrolyzing) Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2A7_CONWI
PLM1_100_b1_sep16_scaffold_214_29
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26787..28532)
-----------------
DNA (1746bp)
protein (582aa)
5-oxoprolinase (ATP-hydrolyzing) Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2A8_CONWI
N-methylhydantoinase A/acetone carboxylase beta subunit
N-methylhydantoinase A/acetone carboxylase beta subunit {ECO:0000313|EMBL:AHY47769.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM1_100_b1_sep16_scaffold_214_30
Thermus oshimai, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

28550..29002
-----------------
DNA (453bp)
protein (151aa)
Uncharacterized protein Tax=Thermus oshimai JL-2 RepID=K7R0B2_THEOS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV76705.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus oshimai JL-2.;"
Displaying items 1-30 of 34 in total

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