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PLM3_60_coex_sep16_scaffold_275_7

Organism: PLM3_60_coex_sep16_Magnetospirillum_magneticum_63_15

near complete RP 47 / 55 MC: 2 BSCG 47 / 51 ASCG 10 / 38 MC: 1
Location: comp(6289..9762)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.6
  • Coverage: 1157.0
  • Bit_score: 1449
  • Evalue 0.0
Transcription-repair-coupling factor Tax=Oceanibaculum indicum P24 RepID=K2JK31_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 62.6
  • Coverage: 1157.0
  • Bit_score: 1449
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 61.7
  • Coverage: 1138.0
  • Bit_score: 1418
  • Evalue 0.0

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Taxonomy

Oceanibaculum indicum → Oceanibaculum → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3474
TTGAACAAACCATTCGCCAAGTTGAATCGACCGGGCAGGTGGACTCTGTCCGGTGTCCCCGAGGGCTATGATGCGCTGGTGCTGTCCGACCTCGCCCGCGAGGGCGGCCGGCCGGCGCTGCATATCTGCCGCGACGATGCGCGGCTTTCGAAACTGGCCGACCTGATCCCGTTTTTCGATCCCGACATCGCCGTTCTGCGCATACCGGCCTGGGATTGCCTGCCCTATGATCGCGTGCCCCCGCATCGCGACATCGTCTCCGCGCGCATCGACGCCCTGGCCGACCTCGCCACGCCGGCCGCCGGACCGGCCGGGAGAATCGTTCTGACCACGGTGTCCGCTGTGCTGCAGCGGCTGCCCCGGCCGGAGTTCCTGGCGGAGGCGGTCCTGACGGTCAAGACGGGCGATCGGCTAAGGCCGGAGGCACTGTTCGAGTATCTCGGTCGCAACGGCTATGTCCGCGCCGGCGCGGTCAGCGAAGCCGGTGAGTACGCCATGCGCGGCGGCATCGTCGATCTGTTTCCGCCGGGACAGGCGCAGCCGCTGCGCATCGATTTCTTCGGCGACGACGTAGAGTCCCTGCGGGTGTTCGATCCCCTGACCCAGCGCAGCACGGACAGGCTCAACGCCATCACACTGCGGCCGGTGCGGGAGTTTCGCCTGGACGAACATTCCATCGAGCTGTTCCGCTCCCGCTACCGCGAGCGCTTCGGCGCCGGAACCGCCGACGATCCGCTGTACGAATCCGTGAGTCACGGCCGCTACTACTCGGGCATGGAGCATTGGTTGCCGCTGTTTCATGACAAGCTGGTCACGCTGTTCGACTATCTGCCGGGCGCCATCGTCAGCCTGGATCACCAGGCGGAAGAGGCGCGGGATGCGCGCCTTGACCTGATCGCCGACTTGCATGAGGCCCGCCTGGCCCATCAGCGGATCGACGAACCGGGGGGCACGCCTTATCGGCCGTTGCCGCCGGAGATGCTCTATCTCAACAAAGGCGACTGGAACGCAGCCTTGGCGGAACGGGCGGTGGCGCTGCTCTCGCCATTCCATCTGCCGGAGGAGCATGCGCACGCAATTCCGATGGCGGCGCGCAAAGGCCGGGATTTCGCGGAGGCGCGCGCGCAGCCGAATCTGAATCTCTACGACGCCGTGCGCGAGCATGTGGATTCGCTGCAGGCGGCCGGCAAGCGCGTGATCGTCGCCGGCTATACGGCTGGCAGTCTTGACCGCCTCAGCCATATGCTGGGGGATCACGGTCTGGGCCGACAGCAGCCCATCCAGTCCTGGCGTGATGCCGACAAGCTGCAGTCCGGCGAACTGGGGTTGGTGGCGCTGCCGCTGGATTCCGGCTTCGAGACCGCGGACGCTGCCATTATCGCCGAGCCGGAGATCCTCGGCGATCGCCTCAGCCGGCCGCCGCGGAAGCGCAAGCGGCCGGAGCAGTTCCTGGCTGAACTGGCGAGCTTCGCCGAGGGCGACTTCGTGGTTCACGTGGATCATGGTATCGGCCGCTATGACGGGCTGGAGACGCTGGATGTGGGCGGCGCGCCCCATGACTGCCTGCGCCTGATCTATGACGGCGGCGACAAGCTCTACATCCCCGTCGAGAACATCGATGCTATCTCCCGCTACAGTTCCGAAGACGCCTTCGTCCAGCTCGACAAGCTGGGCGGTCTCGCCTGGCAGTCGCGCAAATCGCGGGTCAAGCAGCGCATCCGCGAAGTTGCCCAACAACTCATCAAAACGGCGGCGCAACGGCAGGTGCGGGCCGGCCAGGTCATGCAGCCAGCCGAGGGACTCTATGAAGAGTTCTGCGCCCGGTTCCCCTATATGGAGACCGAGGATCAGGCGAGGGCGATCGAAGATGTCATCGAGGATTTGGCATCGGGCCGCCCCATGGACCGGCTCATTTGCGGCGATGTCGGCTTCGGCAAGACGGAGGTCGCGTTGCGCGCCGCCTTCATCGCTGTCATGGCGGGATACCAGGTCGCGGTGGTAACGCCGACGACGCTGCTTTGCCGTCAGCACAACCGGACATTCGCCGAAAGATTTACCGGATTGCCGGTCAAGGTGGCGCAGCTCTCGCGCCTCGTCGCGGGCAAGGCCGCGACAGCCGTCAAGGGTGGCATGGCCGACGGGAAGATCGATATCGTCATTGGCACCCATGCGCTCTTAGGCAAGGCTGTCAGCTTCAAATCGCTGGGCCTGCTGATCGTCGATGAGGAGCAACATTTCGGTGTGGCGCAAAAGGAACGGCTGAAGGAACTGCGCGCCGATGTGCATGTGCTGACGCTGACCGCAACGCCGATTCCCCGCACGCTGCAGATGGCGCTGTCGGGCGTGCGGGAAATGAGCCTGATCGCCACGCCGCCGGTGGACCGGTTGGCGGTGCGGACCTTCGTGCTGCCCTACGATCCCGTGATCCTGCGGGAGGCGATCTTGCGGGAGCATTATCGCGGCGGGCAGCTCTTCTACATTTGTCCGCGGATCGAGGATCTGGATCGGGTTGCGGAACGGCTGCGGGAGCTGGTGCCGGAGGTTAAGTTCGTCATGGCCCACGGCCAGATGGCGCCTACGCAGCTGGAAGCCGCCATGACGGCGTTCTATGACCGGCAGTACGACATGCTGCTCTCCACCAGCATCGTCGAATCCGGCCTGGATATACCGACGTCGAACACGATCATCATCCATCGTGCGGAAATGTTCGGCCTGTCGCAACTCTATCAATTGCGCGGCCGTGTCGGCCGGGCGAAGCAGCGGGGCTATGCCTATCTGATGCTGCCGCCGGCCAGGGTCCTGTCGGAAACGGCGGCGAAGCGGCTCCAGGTCATGCAGACTTTGGATCAGCTGGGTGCCGGGTTCACGCTGGCCAGCCACGATCTGGATATCCGCGGCGCCGGCAATCTGCTGGGTGAGGAACAATCGGGCCATATCCGCGAAGTCGGTGTCGAACTTTACCAGCATATGCTGGAAGAGGCCGTGGCCGAGGCCCGTGGGGCCGCACGGGCGGAGAGCGTTGAGTCCTGGGCGCCGCAGATTAACCTGGGCATGCCCGTGCTTATCCCCGACAGCTACGTCGCCGATCTCGGCGTGCGGCTCAGCCTCTATCGCCGCCTCGGCGGCTTGGTGGATGCGGCGGAGATCGAGGCCTTTGCCGCCGAACTCGTCGATCGTTTCGGCCCGCTGCCGGCCGAAGTCGAAAACCTGCTTGAAGTCATTGCCATCAAGCGGCTCTGCCGCGCCGCCGGCATCGACAAGGTAGAGGCGGGGCCGAAGGGTTGCCTGCTGTCGTTCCGCCAGAACCGCTTTGCCAAACCGGAGAAACTGGTCGCTTACATCGGCCGCCGGGCGAGCGATATCAATCTCCGGCCCGACCACAAGCTCGTGGTGCGGCAGAATTGGGACAGCGCCAAGAGCCGCGTCGCCGGCATTCGCAACCTGATGAACGAGATCGCCGCCCTGGCGGCATAG
PROTEIN sequence
Length: 1158
LNKPFAKLNRPGRWTLSGVPEGYDALVLSDLAREGGRPALHICRDDARLSKLADLIPFFDPDIAVLRIPAWDCLPYDRVPPHRDIVSARIDALADLATPAAGPAGRIVLTTVSAVLQRLPRPEFLAEAVLTVKTGDRLRPEALFEYLGRNGYVRAGAVSEAGEYAMRGGIVDLFPPGQAQPLRIDFFGDDVESLRVFDPLTQRSTDRLNAITLRPVREFRLDEHSIELFRSRYRERFGAGTADDPLYESVSHGRYYSGMEHWLPLFHDKLVTLFDYLPGAIVSLDHQAEEARDARLDLIADLHEARLAHQRIDEPGGTPYRPLPPEMLYLNKGDWNAALAERAVALLSPFHLPEEHAHAIPMAARKGRDFAEARAQPNLNLYDAVREHVDSLQAAGKRVIVAGYTAGSLDRLSHMLGDHGLGRQQPIQSWRDADKLQSGELGLVALPLDSGFETADAAIIAEPEILGDRLSRPPRKRKRPEQFLAELASFAEGDFVVHVDHGIGRYDGLETLDVGGAPHDCLRLIYDGGDKLYIPVENIDAISRYSSEDAFVQLDKLGGLAWQSRKSRVKQRIREVAQQLIKTAAQRQVRAGQVMQPAEGLYEEFCARFPYMETEDQARAIEDVIEDLASGRPMDRLICGDVGFGKTEVALRAAFIAVMAGYQVAVVTPTTLLCRQHNRTFAERFTGLPVKVAQLSRLVAGKAATAVKGGMADGKIDIVIGTHALLGKAVSFKSLGLLIVDEEQHFGVAQKERLKELRADVHVLTLTATPIPRTLQMALSGVREMSLIATPPVDRLAVRTFVLPYDPVILREAILREHYRGGQLFYICPRIEDLDRVAERLRELVPEVKFVMAHGQMAPTQLEAAMTAFYDRQYDMLLSTSIVESGLDIPTSNTIIIHRAEMFGLSQLYQLRGRVGRAKQRGYAYLMLPPARVLSETAAKRLQVMQTLDQLGAGFTLASHDLDIRGAGNLLGEEQSGHIREVGVELYQHMLEEAVAEARGAARAESVESWAPQINLGMPVLIPDSYVADLGVRLSLYRRLGGLVDAAEIEAFAAELVDRFGPLPAEVENLLEVIAIKRLCRAAGIDKVEAGPKGCLLSFRQNRFAKPEKLVAYIGRRASDINLRPDHKLVVRQNWDSAKSRVAGIRNLMNEIAALAA*