ggKbase home page

PLM3_60_coex_sep16_scaffold_2422_7

Organism: PLM3_60_coex_sep16_Rokubacteria_71_14

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 3 ASCG 10 / 38
Location: comp(4750..7944)

Top 3 Functional Annotations

Value Algorithm Source
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 52.0
  • Coverage: 841.0
  • Bit_score: 820
  • Evalue 3.90e-235
Transcription-repair coupling factor bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 76.6
  • Coverage: 1071.0
  • Bit_score: 1605
  • Evalue 0.0
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 76.9
  • Coverage: 1071.0
  • Bit_score: 1612
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Rokubacteria_71_22 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 3195
ATGTTGAGAGAGTGGCAGGCGTTCGAATCCCTGGCGAAGTCCTTCGCCGAGGGAGAGGTCCGCCTGCGCGTCGCCGGCCTCGCCGGGTCCGCCCGTCCCCTGGTCGTCGCCGAGCTGCTGCAGACCCACCCCCGCGCCGCCGTCGTGGTCGTCCGCTCGCTGCCCGACGCCCACCGCTGGACGCAAGATCTAAAATTCTTCGGCGCGCCGGTCCTCGAGTTCCCCGAGCGCGAGCCGCGGCTCTGGCGCGGCGGCCACCACCGCGAGGCCGACGCCGAGCGCGCGGTGATCGCGCGGCGGCTGGCGGCCGGCGAGCCGGTCGTCGTCGTCGCCACCCCGGCCGCCCTGGACACGACGCTGCCGGCGCCGGCGGACTTCTCGGCCCGGACGCTGCGGATCGGCGTGGGGGACCGGCTCGAGCGCGAGCTGCTGCTGGAGGCGTTCGAGACGGCCGGCTACGAGCGCGTCGACACCGTCGTCGAGGTCGGGCAGTGGAGCGTGCGGGGCGGCATCGTCGACGTCTTCGCCCCCAGCCATCCGAGCCCGGCGCGCCTGGAGTTCTTCGGCGACGACGTGGAGTCGATCCGCCGGTTCGATCCCACCACGCAGCGCTCCACCGACGCGCTCGACGAGCTGCTCGTGCTGCCCCTCGGCGGCCCCGCCGACGACGCGGCCGGCGCCGCGCGCTTGCTCGACTACGTTCCCCCGACCGCGCCGATGATCCTCGACGCCCCGGCGCTGCTGGAGGAGACGTCGGAGGAGGCGCCGGGCCGCCGGCCGCTGCGCGAGGTGCTCGGCGACCGGCCCCGCGTCGAGCTGGAGCTGCTCGCCGGCACCGCGCCCGAGCACGTGCTCGACACCCAGGAGGTCCCGCGCTTCACGGGCCACTTCGCCCAGCTCCGCGAGGCGCTCGGCCGATGGCGCGCGGAGGGCTTCACGGTACGGCTGGTCGCCGCCGACGAGCACCAGGCCGAGCACCTGCGCCAGATCCTGCGCGACCACGACGTCGAGGCGCCCCTGGCGGCGACCATCGACGCGCCGGGGCCGCTGGCGATCGTGGTGGGCGAGTGCTCGGCCGGCATCGCCATCTCGGCGGTGGGGCTGGTGCTGCTCACCGAGGCCGAGGTCTTCGGAGCCCGGCGCCGCGCGCTGCGGCGGCCCAAGTACCAGCGCGGCGCCGCCCTCACCGCGTTCACCGACCTCGCGGTCGGCGATCTCGTCGTGCACGAGGACCACGGCATCGGCCGCTACCTCGGGCTGCGCACGATGGCGGTGGGCGACCGCGACGGCGACTTCCTGTTGCTCGAGTACGCCGAGGGCGGGCGGTTGTACGTGCCGGTCGAGCGGCTCGACCTCGTCTCGAAATACCTCGGCGGCGACGCGGGCGCCGCCCGCCTCGACCGCATGGGCGGCGCCTCCTGGCAGCGCGTGAAGGAGTCGGTGCGGGCCGCCCTGCGCGAGATGGCCGAGGGGCTGCTCAAGCTCTACGCCCAGCGCGCGGTGGCCGAGGGCCACTCGTTCACGAGCGACACGCCGTGGCAGCGCGAGTTCGAGGCGGCGTTCCGGTTCGAGGAGACGCCCGATCAGCTCCGCGCCATCGAGGAGGTCAAGCGGGACATGCAGACCGACCGGCCGATGGACCGGCTGGTCGCCGGCGACGTGGGGTACGGCAAGACCGAGGTCGCCCTGCGGGCCGCGTTCAAGGCGGTCGCCGACGGCTACCAGGTCGCCGTGCTGGTCCCGACGACCGTGCTGGCCCAGCAGCACTGGTCCACCTTCGCCGATCGGTTCGGAGCGTTTCCCGCGAAGGTCGAGCTGCTCTCGCGCTTCCGCTCGCCCAAGGAGCAGAAGGCGGTGGTGGGGGGGCTGCGGCAGGGCACGGTCGACGTCGTGATCGGCACCCACCGGCTGCTGTCCAAGGACGTCGCGTTCAAGAACCTGGGGCTGATGATCATCGACGAGGAGCACCGGTTCGGCGTCGCCCACAAGGAGCGGATGAAGCAGCTCCGCGCCTCGGTCGACGTGCTGGCGCTGACCGCCACCCCGATCCCGCGCACGCTGTACATGTCGCTGTCCGGCGTGCGCGACATGTCGGTCATCGAGACCCCGCCGCTCGACCGGCTGCCGATCGAGACGGTCGTGCGGCGGTTCAGCAAGGCCGTCATCAAGGAGGCGCTCGAGCGCGAGCTGGCGCGCGGCGGCCAGGTGTTCTTTGTCCACAACCGGGTGCAGTCGCTCGTCTCCATGACGCGATTCATCCAGGAGCTGGTGCCCCAGGCGCGCGTCATCATGGGCCACGGCCAGATGGGCGAGCGCGAGCTGGAAGCGACGATGGTCCGGTTCGTGAGCGGCCAGGCCGACATCCTGGTCTCGACCGCCATCGTCGAGTCCGGCCTCGACATCCCGGCCTCCAACACGATCATCATCAATCGCGCCGACCGCTTCGGCCTCGCCCAGCTCTACCAGCTGCGCGGACGCGTGGGGCGCGAGCGGCAGCAGGCCTTCTGCTACCTGCTGGTGCCGGCCGACGGCCGGGTGGACGAGCAGGCCCAGCGCCGGCTGCGGGCGCTGCAGGAGCTGACCGAGCTGGGCTCGGGGTTCAAGCTGGCGCTGCGGGACCTCGAGATCCGCGGGGCGGGCAACCTCCTGGGCGCCGAGCAACACGGCCACATCGCGGCCGTCGGGTATGATCTATACTCAAAGCTTCTCGCCGAAGCTGTGCAAGAATTGAGGGGCGATCCGACCACGGTCGCCGTCGAACCGATCATCAGTGTCCAGGTCGAAGGGTTCTTGCCGGAGGAGTATGTCCCTGAGGTCAATCAGCGACTGGCGTTCTACAAGCGGCTGGCCGGCGCGGCCGGCGACGGCGAGCTCACCGACCTCCGCGCCGAGCTCCTGGACCGCTTCGGACCGCTGCCCGAGCCCGCCGAGCAGCTCATCGACATCGTCCGCATCCGCATCGAGGCGCGCGCGCTGGCCATCGAGCGCGTCGAGGCCGGCGAGGGCCGGGCGGTGATCACCTTCTCGCCCGCCACGTCGATCGAGCCCCAACGGCTGGTCGCGGCGATCCAGGCCAGCCGCGGCCGGCTCCGGATGCGCCGCGAGTTCACGCTGGAGGCGGCCATCGCCACCGGCGGGTGGCCCGCGGTGCGGGACTCGTTGCTCGGGCTGCTCAGGGGGTTCGCGCGGCCATGA
PROTEIN sequence
Length: 1065
MLREWQAFESLAKSFAEGEVRLRVAGLAGSARPLVVAELLQTHPRAAVVVVRSLPDAHRWTQDLKFFGAPVLEFPEREPRLWRGGHHREADAERAVIARRLAAGEPVVVVATPAALDTTLPAPADFSARTLRIGVGDRLERELLLEAFETAGYERVDTVVEVGQWSVRGGIVDVFAPSHPSPARLEFFGDDVESIRRFDPTTQRSTDALDELLVLPLGGPADDAAGAARLLDYVPPTAPMILDAPALLEETSEEAPGRRPLREVLGDRPRVELELLAGTAPEHVLDTQEVPRFTGHFAQLREALGRWRAEGFTVRLVAADEHQAEHLRQILRDHDVEAPLAATIDAPGPLAIVVGECSAGIAISAVGLVLLTEAEVFGARRRALRRPKYQRGAALTAFTDLAVGDLVVHEDHGIGRYLGLRTMAVGDRDGDFLLLEYAEGGRLYVPVERLDLVSKYLGGDAGAARLDRMGGASWQRVKESVRAALREMAEGLLKLYAQRAVAEGHSFTSDTPWQREFEAAFRFEETPDQLRAIEEVKRDMQTDRPMDRLVAGDVGYGKTEVALRAAFKAVADGYQVAVLVPTTVLAQQHWSTFADRFGAFPAKVELLSRFRSPKEQKAVVGGLRQGTVDVVIGTHRLLSKDVAFKNLGLMIIDEEHRFGVAHKERMKQLRASVDVLALTATPIPRTLYMSLSGVRDMSVIETPPLDRLPIETVVRRFSKAVIKEALERELARGGQVFFVHNRVQSLVSMTRFIQELVPQARVIMGHGQMGERELEATMVRFVSGQADILVSTAIVESGLDIPASNTIIINRADRFGLAQLYQLRGRVGRERQQAFCYLLVPADGRVDEQAQRRLRALQELTELGSGFKLALRDLEIRGAGNLLGAEQHGHIAAVGYDLYSKLLAEAVQELRGDPTTVAVEPIISVQVEGFLPEEYVPEVNQRLAFYKRLAGAAGDGELTDLRAELLDRFGPLPEPAEQLIDIVRIRIEARALAIERVEAGEGRAVITFSPATSIEPQRLVAAIQASRGRLRMRREFTLEAAIATGGWPAVRDSLLGLLRGFARP*