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PLM3_60_coex_sep16_scaffold_2422

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2422_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1..810)
DNA (810bp) protein (270aa)
Release factor glutamine methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein methyltransferase HemK
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_2422_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(810..1883)
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prfA; peptide chain release factor 1
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_2422_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(1984..2199)
DNA (216bp) protein (72aa)
50S ribosomal protein L31 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
LSU ribosomal protein L31P
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_2422_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2239..3558)
DNA (1320bp) protein (440aa)
rho; transcription termination factor Rho bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
rho; transcription termination factor Rho
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_2422_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3691..4188)
DNA (498bp) protein (166aa)
PpiC-type peptidyl-prolyl cis-trans isomerase bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_2422_6
unknown

Not on your lists

4221..4772
DNA (552bp) protein (184aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2422_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4750..7944)
DNA (3195bp) protein (1065aa)
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-)
Transcription-repair coupling factor bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_2422_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7976..8662)
DNA (687bp) protein (229aa)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8PE23_9BRAD
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_2422_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8921..9568)
DNA (648bp) protein (216aa)
Redox-sensing transcriptional repressor rex bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rex; redox-sensing transcriptional repressor rex
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2422_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9622..9948)
DNA (327bp) protein (109aa)
ATP synthase subunit C, membrane-bound, F0 sector; DCCD-binding (EC:3.6.3.14)
ATP synthase subunit C, membrane-bound, F0 sector DCCD-binding (Modular protein) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_2422_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9976..10758)
DNA (783bp) protein (261aa)
ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2422_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10749..11126)
DNA (378bp) protein (126aa)
id=4246298 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_2422_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11113..11349)
DNA (237bp) protein (79aa)
ATP synthase-associated magnesium import membrane protein AtpZ bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
magnesium transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_2422_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11455..13107)
DNA (1653bp) protein (551aa)
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
binding-protein-dependent transport system inner membrane protein
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_2422_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13114..14178)
DNA (1065bp) protein (355aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter-like protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_2422_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14180..14488)
DNA (309bp) protein (103aa)
Extracellular solute-binding protein, family 1 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular solute-binding protein
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 16 items

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