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PLM3_60_coex_sep16_scaffold_2214_7

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: 7310..7789

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B375_FRADG similarity UNIREF
DB: UNIREF100
  • Identity: 47.7
  • Coverage: 151.0
  • Bit_score: 138
  • Evalue 3.60e-30
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.0
  • Coverage: 151.0
  • Bit_score: 139
  • Evalue 3.00e-30
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 47.7
  • Coverage: 151.0
  • Bit_score: 138
  • Evalue 1.00e-30

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Taxonomy

Syntrophomonas zehnderi → Syntrophomonas → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 480
GTGGGGCGGTTGCGGCGGACCCAGGCCCGCCTGCACAAGCTCCTGGGCCGCGAGCCCACCGACCAGGAGCTGGCCGTCGAGCTGGACGTGCCGGTCGACAAGGTCGTCCGGCTCCAGGACACCGCCCAGGCGATCACCAGCCTGGACACCCCGATCGGGGACGACGGGGCGGCGTTGCAGGACTTCCTTGAGGACGACTCGGCCGTCGGCCCGGATGAGTTGGCGGTGGAGGCGGTCGGCCGCGAGGCCCTGGAGCAGGTCCTCAACGCCCTGCCCTGGCGCGAGCGGCAGGTCCTGATCCTGCGGTTCGGCCTTGATTCTGGGACGCCCCGGACGCTGGAGGAGGTCGGCGCGGTGATGGGCTTCTCCCGGGAGCGGGCCCGCCAGGTCGAACGCGACGCGTTGGCGGCGCTGCGCAGGCCCGAGATCCGCGCCCGCCTAGAGGACTACTCCGGCGGCGAGGTGGGCGCCATCCGATGA
PROTEIN sequence
Length: 160
VGRLRRTQARLHKLLGREPTDQELAVELDVPVDKVVRLQDTAQAITSLDTPIGDDGAALQDFLEDDSAVGPDELAVEAVGREALEQVLNALPWRERQVLILRFGLDSGTPRTLEEVGAVMGFSRERARQVERDALAALRRPEIRARLEDYSGGEVGAIR*