ggKbase home page

PLM3_5_b1_sep16_scaffold_38_27

Organism: PLM3_5_b1_sep16_Acidothermus_cellulolyticus_64_13

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(27432..28304)

Top 3 Functional Annotations

Value Algorithm Source
sen:SACE_1934 RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi similarity UNIREF
DB: UNIREF100
  • Identity: 66.1
  • Coverage: 289.0
  • Bit_score: 362
  • Evalue 2.20e-97
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 67.8
  • Coverage: 283.0
  • Bit_score: 347
  • Evalue 3.50e-93
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:AGZ40327.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.8
  • Coverage: 283.0
  • Bit_score: 347
  • Evalue 1.70e-92

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Actinoplanes friuliensis → Actinoplanes → Micromonosporales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 873
ATGGCTCAAGACGATTGGCTGGCGGACCGATTCGAGCAGCACCGCAGTCATCTGCGGGCCGTGGCCTACCGGATGCTCGGATCGGCGAGTGACGCCGACGACGCGGTCCAGGAGGCGTGGATCAGGCTCAGCCGGTCTGACAGCAGTGCCGTTGAGAACCTCGGCGGCTGGCTCACCACTGTGGTGGCTCGGGTCGCACTGGACATGTTGCGTTCGCGTACGTCGCGGCGCGAAGAACCAGTTGGCGAGGTGCCGCCACCGCCCGCTGATACCGGCACATTCGGAGCTGAGCCCGAGCGTGCCGCCGAGCTCGCTGACTCCCTAGGACCAGCCATGCTCGTGGTGCTGGAGACGTTGTCACCAGCCGAGCGGATCGCCTTTGTGCTGCATGACATGTTCGCCGTTCCGTTCGATGAGATCGCCCCGATCGTCGGGCGTTCACCAGCTGCGGCGCGACAGCTGGCGAGCCGCGCTCGCCGCCGCGTCCAGGGAGTCGCTGTCGCGCCCGACGATCGCGGCCGTACCCGGCGAATCGTCGAGGCTTTCCTGGCCGCGTCCCGCAATGGAGATTTCGGAGCATTGCTTGCGCTGCTCGATCCAGACGTCGTGCTTTCCGCCGACGCCGATGCCGTGCGGGTGGGCGCGTCGGACCTGGTAGCCGGCGCCAAGGCCGTCGCCGAGTCGTTCTCGGGACGAGCCCGAGCCGCGCAACTGGCCTTGATCGATGGGCAACCCGGAGCCGTCTGGGCGCCTGGCGGCAAGCCTCGGGTCGTCTTCAGCTTCACAGTCCATGACGACCAGATCACCGCGATCCAGTTGCTGGCTGACGCGACTCGACTCGGTGAGCTGGACCTTGTGTTGTTGGGCGACTGA
PROTEIN sequence
Length: 291
MAQDDWLADRFEQHRSHLRAVAYRMLGSASDADDAVQEAWIRLSRSDSSAVENLGGWLTTVVARVALDMLRSRTSRREEPVGEVPPPPADTGTFGAEPERAAELADSLGPAMLVVLETLSPAERIAFVLHDMFAVPFDEIAPIVGRSPAAARQLASRARRRVQGVAVAPDDRGRTRRIVEAFLAASRNGDFGALLALLDPDVVLSADADAVRVGASDLVAGAKAVAESFSGRARAAQLALIDGQPGAVWAPGGKPRVVFSFTVHDDQITAIQLLADATRLGELDLVLLGD*