ggKbase home page

PLM3_5_b1_sep16_scaffold_4391

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_5_b1_sep16_scaffold_4391_1
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(2..928)
DNA (927bp) protein (309aa)
Cyclic nucleotide-binding protein Tax=Frankia sp. CN3 RepID=G6HGR8_9ACTO
Crp/Fnr family transcriptional regulator
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3_5_b1_sep16_scaffold_4391_2
unknown

Not on your lists

1038..1256
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3_5_b1_sep16_scaffold_4391_3
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1267..2214
DNA (948bp) protein (316aa)
Putative glycosyltransferase Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YX60_NOCFA
glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:BAD57231.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
PLM3_5_b1_sep16_scaffold_4391_4
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2368..2913
DNA (546bp) protein (182aa)
Uncharacterized protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S2G6_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ERK89811.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
hypothetical protein
PLM3_5_b1_sep16_scaffold_4391_5
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2901..3287
DNA (387bp) protein (129aa)
Copper binding lipoprotein Tax=Rhodococcus ruber BKS 20-38 RepID=M2XT16_9NOCA
Copper binding lipoprotein {ECO:0000313|EMBL:EME64086.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber BKS 20-38.;"
hypothetical protein
PLM3_5_b1_sep16_scaffold_4391_6
unknown

Not on your lists

3547..3684
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_5_b1_sep16_scaffold_4391_7
Methanosarcina sp. 2.H.T.1A.8, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3706..4521)
DNA (816bp) protein (272aa)
Alpha/beta hydrolase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U292_MYXSD
Alpha/beta hydrolase {ECO:0000313|EMBL:KKG25468.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.T.1A.8.;"
alpha/beta hydrolase
PLM3_5_b1_sep16_scaffold_4391_8
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4536..5639)
DNA (1104bp) protein (368aa)
ArsR family transcriptional regulator Tax=Amycolatopsis nigrescens RepID=UPI00035FF004
Transcriptional regulator, ArsR family
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CCH27945.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_5_b1_sep16_scaffold_4391_9
unknown

Not on your lists

5799..6680
DNA (882bp) protein (294aa)

This feature has no annotations

PLM3_5_b1_sep16_scaffold_4391_10
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6753..8603)
DNA (1851bp) protein (617aa)
AMP-dependent synthetase and ligase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A1Y7_THECD
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACY97825.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_5_b1_sep16_scaffold_4391_11
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8754..9383
DNA (630bp) protein (210aa)
Putative DNA primase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VV30_9ACTO
putative DNA primase
Putative DNA primase {ECO:0000313|EMBL:AGZ39511.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_5_b1_sep16_scaffold_4391_12
Actinosynnema pretiosum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9480..9896
DNA (417bp) protein (139aa)
Transcriptional activator Tax=Actinosynnema pretiosum subsp. auranticum RepID=Q8KUG6_ACTPA
transcriptional regulator
Transcriptional activator {ECO:0000313|EMBL:AAM54096.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema pretiosum subsp. auranticum.;"
Displaying 12 items

View Taxonomy