ggKbase home page

PLM3-1_50_b1_sep16_scaffold_72

Search features with annotation key words

Displaying items 31-60 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_72_31
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29508..30551
DNA (1044bp) protein (348aa)
NADPH:quinone reductase (EC:1.6.5.5)
NADPH:quinone reductase {ECO:0000313|EMBL:AEA26319.1}; EC=1.6.5.5 {ECO:0000313|EMBL:AEA26319.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
NADPH:quinone reductase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CTA1_PSEUX
PLM3-1_50_b1_sep16_scaffold_72_32
Jeotgalibacillus soli Cunha et al. 2012, Jeotgalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30548..32671
DNA (2124bp) protein (708aa)
N-methylhydantoinase {ECO:0000313|EMBL:KIL48194.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KIL48194.1};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Jeotgalibacillus.;" source="Jeotgalibacillus soli Cunha et al. 2012.;"
Hydantoinase/oxoprolinase Tax=Arthrobacter gangotriensis Lz1y RepID=M7MZT8_9MICC
N-methylhydantoinase
PLM3-1_50_b1_sep16_scaffold_72_33
Bacillus firmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32684..34591
DNA (1908bp) protein (636aa)
UPI0003D6A1D1 related cluster Tax=unknown RepID=UPI0003D6A1D1
N-methylhydantoinase A {ECO:0000313|EMBL:EWG09945.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus firmus DS1.;"
N-methylhydantoinase
PLM3-1_50_b1_sep16_scaffold_72_34
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34605..35354
DNA (750bp) protein (250aa)
Transcriptional regulator, GntR family Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SP25_NOCSJ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KID28442.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
GntR family transcriptional regulator
PLM3-1_50_b1_sep16_scaffold_72_35
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

35371..36312
DNA (942bp) protein (314aa)
Luciferase family protein bin=GWF2_Methylomirabilis_70_14 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_50_b1_sep16_scaffold_72_36
Rhodococcus pyridinivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36309..37529
DNA (1221bp) protein (407aa)
UPI0003D6C3B4 related cluster Tax=unknown RepID=UPI0003D6C3B4
L-carnitine dehydratase
L-carnitine dehydratase {ECO:0000313|EMBL:AHD24097.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus pyridinivorans SB3094.;"
PLM3-1_50_b1_sep16_scaffold_72_37
Neosartorya fischeri, Neosartorya, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

37592..37993
DNA (402bp) protein (134aa)
Putative uncharacterized protein Tax=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) RepID=A1DLD8_NEOFI
Putative uncharacterized protein {ECO:0000313|EMBL:EAW15609.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Neosartorya.;" source="Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL; 181) (Aspergillus fischerianus).;"
PLM3-1_50_b1_sep16_scaffold_72_38
Streptomyces sp. C, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38022..38927
DNA (906bp) protein (302aa)
Urate catabolism protein Tax=Streptomyces sp. C RepID=D9VW38_9ACTO
Urate catabolism protein {ECO:0000313|EMBL:EFL19241.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. C.;"
chitin deacetylase
PLM3-1_50_b1_sep16_scaffold_72_39
Corynebacterium terpenotabidum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38946..39662
DNA (717bp) protein (239aa)
N-carbamoylsarcosine amidase Tax=Corynebacterium terpenotabidum Y-11 RepID=S4XB87_9CORY
N-carbamoylsarcosine amidase
N-carbamoylsarcosine amidase {ECO:0000313|EMBL:AGP29866.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium terpenotabidum Y-11.;"
PLM3-1_50_b1_sep16_scaffold_72_40
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39659..40597
DNA (939bp) protein (313aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase Tax=alpha proteobacterium BAL199 RepID=A8TNA6_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3-1_50_b1_sep16_scaffold_72_41
unknown

Not on your lists

comp(40576..40989)
DNA (414bp) protein (138aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_72_42
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41441..41632)
DNA (192bp) protein (64aa)
Regulatory , FmdB family domain protein Tax=Desulfovibrio sp. A2 RepID=G2H7G1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:BAQ68459.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
FmdB family regulatory protein
PLM3-1_50_b1_sep16_scaffold_72_43
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

41816..43189
DNA (1374bp) protein (458aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] bin=RBG_19FT_COMBO_GAL15_69_19 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM3-1_50_b1_sep16_scaffold_72_44
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

43192..44607
DNA (1416bp) protein (472aa)
phenylhydantoinase (EC:3.5.2.2)
Dihydropyrimidinase {ECO:0000313|EMBL:ABG05661.1}; EC=3.5.2.2 {ECO:0000313|EMBL:ABG05661.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Dihydropyrimidinase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASG7_RUBXD
PLM3-1_50_b1_sep16_scaffold_72_45
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

44609..45262
DNA (654bp) protein (218aa)
N-carbamoylsarcosine amidase (EC:3.5.1.59)
N-carbamoylsarcosine amidase {ECO:0000313|EMBL:ACZ40337.1}; EC=3.5.1.59 {ECO:0000313|EMBL:ACZ40337.1};; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
N-carbamoylsarcosine amidase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C944_SPHTD
PLM3-1_50_b1_sep16_scaffold_72_46
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

45381..47312
DNA (1932bp) protein (644aa)
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U5D5_9CHLR
Aconitate hydratase {ECO:0000313|EMBL:EFH81715.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
PLM3-1_50_b1_sep16_scaffold_72_47
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47309..48478
DNA (1170bp) protein (390aa)
Putative MFS sugar transporter Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RKH2_BLASD
putative MFS sugar transporter
Putative MFS sugar transporter {ECO:0000313|EMBL:CCG02391.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM3-1_50_b1_sep16_scaffold_72_48
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(48453..49694)
DNA (1242bp) protein (414aa)
hydantoinase/carbamoylase (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase {ECO:0000313|EMBL:ABG05660.1}; EC=3.5.1.87 {ECO:0000313|EMBL:ABG05660.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Amidase, hydantoinase/carbamoylase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASG8_RUBXD
PLM3-1_50_b1_sep16_scaffold_72_49
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

50031..51044
DNA (1014bp) protein (338aa)
alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00935}; Short=AlaDH {ECO:0000256|HAMAP-Rule:MF_00935};; EC=1.4.1.1 {ECO:0000256|HAMAP-Rule:MF_00935};; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC; 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum).;"
Alanine dehydrogenase Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PTZ2_METTM
PLM3-1_50_b1_sep16_scaffold_72_50
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51229..51816)
DNA (588bp) protein (196aa)
DSBA oxidoreductase Tax=Pseudomonas sp. 313 RepID=UPI0002F9CD6D
DSBA oxidoreductase {ECO:0000313|EMBL:KFG67952.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
thioredoxin domain-containing protein
PLM3-1_50_b1_sep16_scaffold_72_51
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51861..52826
DNA (966bp) protein (322aa)
cyclase Tax=Rhizobium loti RepID=UPI00037B5D0A
Cyclase family protein {ECO:0000313|EMBL:KIV69900.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;"
cyclase family protein
PLM3-1_50_b1_sep16_scaffold_72_52
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(52830..53864)
DNA (1035bp) protein (345aa)
formamidase (EC:3.5.1.49)
Formamidase {ECO:0000313|EMBL:ABG05579.1}; EC=3.5.1.49 {ECO:0000313|EMBL:ABG05579.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Formamidase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASP9_RUBXD
PLM3-1_50_b1_sep16_scaffold_72_53
unknown

Not on your lists

comp(53861..54286)
DNA (426bp) protein (142aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_72_54
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54295..54555)
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3-1_50_b1_sep16_scaffold_72_55
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

54628..55965
DNA (1338bp) protein (446aa)
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:ADH63744.1}; EC=3.5.1.87 {ECO:0000313|EMBL:ADH63744.1};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
Amidase, hydantoinase/carbamoylase family Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BGC8_MEISD
amidase
PLM3-1_50_b1_sep16_scaffold_72_56
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

56103..57122
DNA (1020bp) protein (340aa)
methylenetetrahydromethanopterin reductase (EC:1.5.99.11)
5,10-methylenetetrahydromethanopterin reductase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBN9_9CHLR
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3-1_50_b1_sep16_scaffold_72_57
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(57163..58071)
DNA (909bp) protein (303aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
Arginase Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS85_KYRT2
arginase
PLM3-1_50_b1_sep16_scaffold_72_trna_1
unknown

Not on your lists

58114..58186
DNA (73bp)
transferRNA Phe
PLM3-1_50_b1_sep16_scaffold_72_58
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

58266..59654
DNA (1389bp) protein (463aa)
Amidase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A9Z2_THECD
amidase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_72_59
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(59668..60468)
DNA (801bp) protein (267aa)
Uncharacterized protein Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2Y5I0_9PSEU
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying items 31-60 of 143 in total

View Taxonomy