ggKbase home page

PLM3-1_50_b1_sep16_scaffold_72

Search features with annotation key words

Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_72_1
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(2..301)
DNA (300bp) protein (100aa)
hypothetical protein Tax=Marinococcus halotolerans RepID=UPI0003B73380
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_72_2
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

360..839
DNA (480bp) protein (160aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00036DDFD4
MarR family transcriptional regulator
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_72_3
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(843..1436)
DNA (594bp) protein (198aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035D28E0
Uncharacterized protein {ECO:0000313|EMBL:KJK13481.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
class III aminotransferase
PLM3-1_50_b1_sep16_scaffold_72_4
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(1436..2083)
DNA (648bp) protein (216aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035D28E0
4-aminobutyrate aminotransferase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_72_5
unknown

Not on your lists

comp(2439..2813)
DNA (375bp) protein (125aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_72_6
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

2850..3644
DNA (795bp) protein (265aa)
Transcriptional regulator, GntR family Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5C8_SPHTD
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:AHY46906.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM3-1_50_b1_sep16_scaffold_72_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

3641..4891
DNA (1251bp) protein (417aa)
L-carnitine dehydratase/bile acid-inducible protein F Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3M7_CONWI
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ADB52392.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3-1_50_b1_sep16_scaffold_72_8
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

4888..5781
DNA (894bp) protein (298aa)
Pyruvate carboxyltransferase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5D0_SPHTD
pyruvate carboxyltransferase
Pyruvate carboxyltransferase {ECO:0000313|EMBL:ACZ37446.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_50_b1_sep16_scaffold_72_9
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

5797..7857
DNA (2061bp) protein (687aa)
5-oxoprolinase (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ACL25949.1}; EC=3.5.2.9 {ECO:0000313|EMBL:ACL25949.1};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
5-oxoprolinase (ATP-hydrolyzing) Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G6Z0_CHLAD
PLM3-1_50_b1_sep16_scaffold_72_10
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

7869..9788
DNA (1920bp) protein (640aa)
5-oxoprolinase (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ABY35472.1}; EC=3.5.2.9 {ECO:0000313|EMBL:ABY35472.1};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
5-oxoprolinase (ATP-hydrolyzing) Tax=Chloroflexus RepID=A9WGE0_CHLAA
PLM3-1_50_b1_sep16_scaffold_72_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

9796..10419
DNA (624bp) protein (208aa)
Isochorismatase hydrolase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVC4_RUBXD
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ABG04654.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3-1_50_b1_sep16_scaffold_72_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

10400..11674
DNA (1275bp) protein (425aa)
homoaconitate hydratase family protein (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit 2 {ECO:0000255|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase 2 {ECO:0000255|HAMAP-Rule:MF_01027}; Short=IPMI 2 {ECO:0000255|HAMAP-Rule:MF_01027};; Isopropylmalate isomerase 2 {ECO:0000255|HAMAP-Rule:MF_01027}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
3-isopropylmalate dehydratase large subunit 2 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=LEUC2_RUBXD
PLM3-1_50_b1_sep16_scaffold_72_13
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

11671..12162
DNA (492bp) protein (164aa)
3-isopropylmalate dehydratase, small subunit Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5D5_SPHTD
3-isopropylmalate dehydratase small subunit
3-isopropylmalate dehydratase, small subunit {ECO:0000313|EMBL:ACZ37451.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_50_b1_sep16_scaffold_72_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

12159..12902
DNA (744bp) protein (248aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA97_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB49166.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3-1_50_b1_sep16_scaffold_72_15
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

12911..13750
DNA (840bp) protein (280aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily bin=GWB2_Chloroflexi_49_20 species=unknown genus=Mesotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
alpha/beta hydrolase
Tax=GWC2_Chloroflexi_49_37_curated
PLM3-1_50_b1_sep16_scaffold_72_16
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13756..15114
DNA (1359bp) protein (453aa)
hypothetical protein Tax=Paenibacillus daejeonensis RepID=UPI000360344F
Permease for cytosine/purines uracil thiamineallantoin {ECO:0000313|EMBL:CDR17823.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
cytosine/purines uracil thiamine allantoin permease
PLM3-1_50_b1_sep16_scaffold_72_17
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

15278..16771
DNA (1494bp) protein (498aa)
ABC transporter substrate-binding protein Tax=Leptolyngbya boryana RepID=UPI0003819066
spermidine/putrescine transport system substrate-binding protein
Spermidine/putrescine transport system substrate-binding protein {ECO:0000313|EMBL:AFY86493.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
PLM3-1_50_b1_sep16_scaffold_72_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

16779..17930
DNA (1152bp) protein (384aa)
ABC transporter related protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9A3_SPHTD
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ACZ40396.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_50_b1_sep16_scaffold_72_19
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

17908..18888
DNA (981bp) protein (327aa)
Binding-protein-dependent transport systems inner membrane component Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9A2_SPHTD
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ40395.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_50_b1_sep16_scaffold_72_20
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

18890..19801
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9A1_SPHTD
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ40394.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_50_b1_sep16_scaffold_72_21
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19816..20787
DNA (972bp) protein (324aa)
hypothetical protein Tax=Aureimonas ureilytica RepID=UPI00035F0E99
Uncharacterized protein {ECO:0000313|EMBL:KJB94396.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
L-asparaginase/glutRNAGln amidotransferase subunit D
PLM3-1_50_b1_sep16_scaffold_72_22
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

20791..22170
DNA (1380bp) protein (460aa)
Uncharacterized protein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SQD6_NOCSJ
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
PLM3-1_50_b1_sep16_scaffold_72_23
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22183..23061)
DNA (879bp) protein (293aa)
hypothetical protein Tax=Rhizobium leguminosarum RepID=UPI000363C4FE
Uncharacterized protein {ECO:0000313|EMBL:EXX90582.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus darwinianus.;"
polysaccharide deacetylase family protein
PLM3-1_50_b1_sep16_scaffold_72_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23115..23393
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Shinella zoogloeoides DD12 RepID=V5D1K9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82211.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_72_25
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

23390..24331
DNA (942bp) protein (314aa)
Cobalamin synthesis protein, P47K Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASG9_RUBXD
cobalamin synthesis protein, P47K
Cobalamin synthesis protein, P47K {ECO:0000313|EMBL:ABG05659.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3-1_50_b1_sep16_scaffold_72_26
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(24325..25488)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FD90_CONWI
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ADB53482.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3-1_50_b1_sep16_scaffold_72_27
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25499..26680)
DNA (1182bp) protein (394aa)
acyl-CoA dehydrogenase Tax=Saccharopolyspora spinosa RepID=UPI000237AB06
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ADG88805.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM3-1_50_b1_sep16_scaffold_72_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26677..28074)
DNA (1398bp) protein (466aa)
MmgE/PrpD family protein Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQE0_PSEUX
MmgE/PrpD family protein
MmgE/PrpD family protein {ECO:0000313|EMBL:AEA22378.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3-1_50_b1_sep16_scaffold_72_29
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(28075..28605)
DNA (531bp) protein (177aa)
MaoC domain protein dehydratase bin=GWD2_Deltaproteobacteria_55_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MaoC-like dehydratase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_72_30
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28595..29437)
DNA (843bp) protein (281aa)
citryl-CoA lyase (EC:4.1.3.34)
Citryl-CoA lyase {ECO:0000313|EMBL:ACA95997.1}; EC=4.1.3.34 {ECO:0000313|EMBL:ACA95997.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
Citryl-CoA lyase Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1KCQ0_BURCC
Displaying items 1-30 of 143 in total

View Taxonomy