Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase sigma factor | similarity |
KEGG
DB: KEGG |
62.7 | 166.0 | 198 | 1.10e-48 | csd:Clst_1328 |
seg (db=Seg db_id=seg from=35 to=46) | iprscan |
interpro
DB: Seg |
null | null | null | null | csd:Clst_1328 |
SIGMA70_2 (db=PatternScan db_id=PS00716 from=128 to=154 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | csd:Clst_1328 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=65 to=166 evalue=4.1e-23 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 4.10e-23 | csd:Clst_1328 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=89 to=166 evalue=8.5e-22 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 8.50e-22 | csd:Clst_1328 |
Sigma70_r3 (db=HMMPfam db_id=PF04539 from=12 to=90 evalue=5.4e-20 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 5.40e-20 | csd:Clst_1328 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=6 to=82 evalue=1.5e-19 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.50e-19 | csd:Clst_1328 |
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=104 to=155 evalue=3.2e-19 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.20e-19 | csd:Clst_1328 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=143 to=154 evalue=3.6e-17 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.60e-17 | csd:Clst_1328 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=128 to=143 evalue=3.6e-17 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.60e-17 | csd:Clst_1328 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=107 to=119 evalue=3.6e-17 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 3.60e-17 | csd:Clst_1328 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=6 to=57 evalue=4.9e-15 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 4.90e-15 | csd:Clst_1328 |
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" |
UNIPROT
DB: UniProtKB |
100.0 | 166.0 | 323 | 2.00e-85 | K2CQQ4_9BACT | |
RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor alias=ACD43_C00105G00006,ACD43_126096.6985.7G0006,ACD43_126096.6985.7_6 id=57010 tax=ACD43 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1, not OD1-i organism_desc=OD1 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 322 | 5.80e-86 | csd:Clst_1328 |