ggKbase home page

ERMGT100_2_curated_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_4_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(658..1092)
-----------------
DNA (435bp)
protein (145aa)
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein id=24446279 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
single-strand binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_trna_1
unknown

Not on your lists

1249..1322
-----------------
DNA (74bp)
transferRNA Pro
ERMGT100_2_curated_scaffold_4_trna_2
unknown

Not on your lists

1357..1430
-----------------
DNA (74bp)
transferRNA Arg
ERMGT100_2_curated_scaffold_4_trna_3
unknown

Not on your lists

1452..1524
-----------------
DNA (73bp)
transferRNA His
ERMGT100_2_curated_scaffold_4_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(1533..2129)
-----------------
DNA (597bp)
protein (199aa)
rdgB; non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] id=24446276 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2126..2917)
-----------------
DNA (792bp)
protein (264aa)
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56] id=24446275 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Lamprocystis purpurea genus=Lamprocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rph; RNase PH (EC:2.7.7.56)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2914..3762)
-----------------
DNA (849bp)
protein (283aa)
murI; glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] id=24446274 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
murI; glutamate racemase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3759..4301)
-----------------
DNA (543bp)
protein (181aa)
lipoprotein LpqB id=24446273 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
germane superfamily protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4298..5755)
-----------------
DNA (1458bp)
protein (486aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] id=24446272 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caulobacter sp. AP07 genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5752..6228)
-----------------
DNA (477bp)
protein (159aa)
SsrA-binding protein id=24446271 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
smpB; SsrA-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_trna_5
unknown

Not on your lists

comp(6275..6358)
-----------------
DNA (84bp)
transferRNA Leu
ERMGT100_2_curated_scaffold_4_8
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(6441..7415)
-----------------
DNA (975bp)
protein (325aa)
transketolase ; K00615 transketolase [EC:2.2.1.1] id=1250433 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
transketolase
Tax=RBG_16_Zixibacteria_48_11_curated
ERMGT100_2_curated_scaffold_4_9
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(7418..8326)
-----------------
DNA (909bp)
protein (303aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MQC6_9BACT
transketolase
Tax=RBG_16_Zixibacteria_53_22_curated
ERMGT100_2_curated_scaffold_4_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8474..9538
-----------------
DNA (1065bp)
protein (355aa)
hypothetical protein id=24556010 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9574..10197)
-----------------
DNA (624bp)
protein (208aa)
Uncharacterized protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BXX1_METCG id=5224245 bin=16ft_combo_ws3_JS1 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_12
RLO_PLX_64_10, Bacteria

Not on your lists

comp(10282..11454)
-----------------
DNA (1173bp)
protein (391aa)
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1) id=14626843 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
ERMGT100_2_curated_scaffold_4_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11451..12830)
-----------------
DNA (1380bp)
protein (460aa)
id=5224246 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_14
unknown

Not on your lists

comp(12827..13627)
-----------------
DNA (801bp)
protein (267aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_4_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13624..15225)
-----------------
DNA (1602bp)
protein (534aa)
id=5224248 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15408..16004
-----------------
DNA (597bp)
protein (199aa)
Putative uncharacterized protein id=3984534 bin=GWC2_Methylomirabilis_70_16 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
ERMGT100_2_curated_scaffold_4_17
unknown

Not on your lists

comp(16094..17518)
-----------------
DNA (1425bp)
protein (475aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_4_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(17538..18299)
-----------------
DNA (762bp)
protein (254aa)
id=5225458 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
ERMGT100_2_curated_scaffold_4_19
unknown

Not on your lists

comp(18296..19711)
-----------------
DNA (1416bp)
protein (472aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_4_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20036..22162)
-----------------
DNA (2127bp)
protein (709aa)
UPI00029A418F related cluster n=1 Tax=unknown RepID=UPI00029A418F id=5224249 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_21
unknown

Not on your lists

comp(22350..23363)
-----------------
DNA (1014bp)
protein (338aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_4_22
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23356..23991)
-----------------
DNA (636bp)
protein (212aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LM80_HALO1
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACY16786.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
ERMGT100_2_curated_scaffold_4_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24086..24994)
-----------------
DNA (909bp)
protein (303aa)
pgsA2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=24588446 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pgsA2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25050..27110
-----------------
DNA (2061bp)
protein (687aa)
Discoidin domain protein n=1 Tax=Patulibacter sp. I11 RepID=H0E870_9ACTN id=5225488 bin=16ft_combo_ws3_JS1 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(27128..27829)
-----------------
DNA (702bp)
protein (234aa)
Family 2 glycosyl transferase n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V4P2_9BACT id=5224252 bin=16ft_combo_ws3_JS1 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(27839..30715)
-----------------
DNA (2877bp)
protein (959aa)
pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] id=24588444 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyruvate phosphate dikinase (EC:2.7.9.1)
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 170 in total

View Taxonomy