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ERMGT100_2_curated_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_28_1
unknown

Not on your lists

1..138
-----------------
DNA (138bp)
protein (46aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_28_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(203..1153)
-----------------
DNA (951bp)
protein (317aa)
id=5224955 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_3
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

comp(1395..3914)
-----------------
DNA (2520bp)
protein (840aa)
Peptidase S8/S53 n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SH45_9BACT
Peptidase S8/S53 {ECO:0000313|EMBL:BAL55481.1}; TaxID=236499 species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
peptidase S8/S53
ERMGT100_2_curated_scaffold_28_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4003..6351
-----------------
DNA (2349bp)
protein (783aa)
Copper-transporting P-type ATPase n=1 Tax=Roseomonas sp. B5 RepID=UPI0003002748
ATPase P
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

6348..7214
-----------------
DNA (867bp)
protein (289aa)
5'-3' exonuclease family protein id=3491501 bin=GWC2_Chloroflexi_73_18 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
5'-3' exonuclease family protein
Tax=RBG_16_Acidobacteria_70_10_curated
ERMGT100_2_curated_scaffold_28_6
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7285..7863
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00037F1F86
Putative lipoprotein {ECO:0000313|EMBL:CDH45753.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
lipoprotein
ERMGT100_2_curated_scaffold_28_7
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7882..8964
-----------------
DNA (1083bp)
protein (361aa)
Putative sensor protein LytS n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZD91_9GAMM
Putative sensor protein LytS {ECO:0000313|EMBL:EIT69859.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
hypothetical protein
ERMGT100_2_curated_scaffold_28_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

8961..9746
-----------------
DNA (786bp)
protein (262aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00038219DC
Response regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMGT100_2_curated_scaffold_28_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9849..10727
-----------------
DNA (879bp)
protein (293aa)
hypothetical protein id=24437570 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10741..11994)
-----------------
DNA (1254bp)
protein (418aa)
alias=16ft_combo_ws3_scaffold_2252_17 id=24418760 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
fibronectin type III domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_11
unknown

Not on your lists

12154..13215
-----------------
DNA (1062bp)
protein (354aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_28_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13422..15212
-----------------
DNA (1791bp)
protein (597aa)
id=5225050 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_trna_2
unknown

Not on your lists

comp(15160..15245)
-----------------
DNA (86bp)
transferRNA Leu
ERMGT100_2_curated_scaffold_28_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15416..16138
-----------------
DNA (723bp)
protein (241aa)
TonB family protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QWL9_CHLT3 id=5224109 bin=16ft_combo_ws3_JS1 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TonB family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16153..18795
-----------------
DNA (2643bp)
protein (881aa)
TPR repeat-containing serine/threonin protein kinase; K08282 non-specific serine/threonine protein kinase [EC:2.7.11.1] id=24418877 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonin protein kinase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ERMGT100_2_curated_scaffold_28_15
unknown

Not on your lists

18915..20234
-----------------
DNA (1320bp)
protein (440aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_28_16
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20502..21266
-----------------
DNA (765bp)
protein (255aa)
Uncharacterized protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I8XCU6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY47892.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
peptidase S54, rhomboid domain-containing protein
ERMGT100_2_curated_scaffold_28_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(21263..24592)
-----------------
DNA (3330bp)
protein (1110aa)
Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1S1_9DELT id=5224576 bin=16ft_combo_ws3_JS1 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycosyl hydrolase, BNR repeat precursor
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24742..25530)
-----------------
DNA (789bp)
protein (263aa)
Response regulator receiver protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=J2AKA8_9DELT id=5225122 bin=16ft_combo_ws3_JS1 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
LytTr DNA-binding region
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25553..25858)
-----------------
DNA (306bp)
protein (102aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPT3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06710.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
ERMGT100_2_curated_scaffold_28_20
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25992..26642
-----------------
DNA (651bp)
protein (217aa)
Putative HTH-type transcriptional regulator ydfF n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SZM0_XANCT
Uncharacterized protein {ECO:0000313|EMBL:AKF87238.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
transcription regulator ArsR
ERMGT100_2_curated_scaffold_28_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26650..28848)
-----------------
DNA (2199bp)
protein (733aa)
Outer membrane receptor protein, putative n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZQ83_MELRP id=5225123 bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane receptor protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(28845..29639)
-----------------
DNA (795bp)
protein (265aa)
Tetratricopeptide repeat domain protein n=2 Tax=Salinibacter ruber RepID=Q2S4J1_SALRD id=5225125 bin=16ft_combo_ws3_JS1 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(29636..30754)
-----------------
DNA (1119bp)
protein (373aa)
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJB8_KORVE id=5225126 bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
histidine kinase internal region
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_24
unknown

Not on your lists

31112..31456
-----------------
DNA (345bp)
protein (115aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_28_25

Not on your lists

comp(31487..31954)
-----------------
DNA (468bp)
protein (156aa)
GNC5-related N-acetyl transferase n=1 Tax=uncultured bacterium RepID=C0JBH3_9BACT
GNC5-related N-acetyl transferase {ECO:0000313|EMBL:ACN22649.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
acetyltransferase
ERMGT100_2_curated_scaffold_28_26
Photobacterium profundum, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31990..32943
-----------------
DNA (954bp)
protein (318aa)
Uncharacterized protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z0U2_PHOPR
Uncharacterized protein {ECO:0000313|EMBL:EAS42177.1}; TaxID=314280 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium profundum 3TCK.;"
hypothetical protein
ERMGT100_2_curated_scaffold_28_27
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

32940..34460
-----------------
DNA (1521bp)
protein (507aa)
hypothetical protein id=24544175 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Demetria terragena genus=Demetria taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
ERMGT100_2_curated_scaffold_28_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

34460..36619
-----------------
DNA (2160bp)
protein (720aa)
id=5225050 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_28_29
unknown

Not on your lists

comp(36620..37327)
-----------------
DNA (708bp)
protein (236aa)
hypothetical protein id=717726 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
Displaying items 1-30 of 58 in total

View Taxonomy