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ERMGT100_2_curated_scaffold_65

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_65_1

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2..823
-----------------
DNA (822bp)
protein (274aa)
Transposase n=1 Tax=sediment metagenome RepID=D9PLF3_9ZZZZ
Transposase {ECO:0000313|EMBL:EFK95612.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
ERMGT100_2_curated_scaffold_65_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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983..1630
-----------------
DNA (648bp)
protein (216aa)
Peptidase M50 id=24484397 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1650..2696
-----------------
DNA (1047bp)
protein (349aa)
tryptophanyl-tRNA synthetase id=24484396 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
tryptophanyl-tRNA synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2693..3448
-----------------
DNA (756bp)
protein (252aa)
hypothetical protein; K05896 segregation and condensation protein A id=24484395 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
scpA; chromosome segregation and condensation protein ScpA
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3452..4249
-----------------
DNA (798bp)
protein (266aa)
scpB; Segregation and condensation protein B; K06024 segregation and condensation protein B id=24484394 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
chromosome segregation and condensation protein ScpB
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4246..6018
-----------------
DNA (1773bp)
protein (591aa)
Pseudouridine synthase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G2X0_CHLAD id=5225859 bin=16ft_combo_ws3_JS1 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pseudouridine synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6327..6890
-----------------
DNA (564bp)
protein (188aa)
alias=16ft_combo_ws3_scaffold_92_82 id=24484393 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6953..8068
-----------------
DNA (1116bp)
protein (372aa)
hypothetical protein id=24484392 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8219..9454
-----------------
DNA (1236bp)
protein (412aa)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=GLGC_THERP id=5225856 bin=16ft_combo_ws3_JS1 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glgC; glucose-1-phosphate adenylyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9451..10725
-----------------
DNA (1275bp)
protein (425aa)
Glucose-1-phosphate adenylyltransferase n=2 Tax=Roseiflexus RepID=A5UZK1_ROSS1 id=5225855 bin=16ft_combo_ws3_JS1 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glucose-1-phosphate adenylyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(10781..12646)
-----------------
DNA (1866bp)
protein (622aa)
Putative Membrane-bound lytic murein transglycosylase D n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML04_9BACT id=5225854 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Membrane-bound lytic murein transglycosylase D
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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12906..15428
-----------------
DNA (2523bp)
protein (841aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain JCM 14587 / BC) RepID=E8U2D7_ALIDB id=5225853 bin=16ft_combo_ws3_JS1 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
filamentous hemagglutinin family outer membrane protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15548..17848
-----------------
DNA (2301bp)
protein (767aa)
ComE-like competence protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67S85_SYMTH id=5225852 bin=16ft_combo_ws3_JS1 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ComE-like competence protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17992..18525
-----------------
DNA (534bp)
protein (178aa)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SJL5_9BACL id=5225851 bin=16ft_combo_ws3_JS1 species=Paenibacillus dendritiformis genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phosphoribosylglycinamide formyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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18518..19279
-----------------
DNA (762bp)
protein (254aa)
Putative Haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJX5_9BACT id=5225850 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Haloacid dehalogenase-like hydrolase domain-containing protein 3
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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19276..20181
-----------------
DNA (906bp)
protein (302aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3B0_SPHTD id=5225849 bin=16ft_combo_ws3_JS1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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20246..21808
-----------------
DNA (1563bp)
protein (521aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH (EC:2.1.2.3 3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG06_9BACT id=5225848 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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21817..23355
-----------------
DNA (1539bp)
protein (513aa)
GMP synthase [glutamine-hydrolyzing] n=4 Tax=Cystobacterineae RepID=Q08V21_STIAD id=5225847 bin=16ft_combo_ws3_JS1 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
guaA; GMP synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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23367..25397
-----------------
DNA (2031bp)
protein (677aa)
Lytic transglycosylase catalytic n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HBR0_ANADF id=5225846 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transglycosylase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_20
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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25387..26295
-----------------
DNA (909bp)
protein (303aa)
hypothetical protein n=1 Tax=Nocardiopsis potens RepID=UPI00034D06EA
Methyltransferase {ECO:0000313|EMBL:EWC64606.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
type 11 methyltransferase
ERMGT100_2_curated_scaffold_65_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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26282..26914
-----------------
DNA (633bp)
protein (211aa)
phosphatidate cytidylyltransferase id=24532860 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
phosphatidate cytidylyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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26911..27828
-----------------
DNA (918bp)
protein (306aa)
hypothetical protein id=24532859 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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27927..30209
-----------------
DNA (2283bp)
protein (761aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C8T0_DESTA id=5225298 bin=16ft_combo_ws3_JS1 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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30428..30631
-----------------
DNA (204bp)
protein (68aa)
cold-shock DNA-binding protein family id=24532858 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Synergistetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cold-shock protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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30740..33754
-----------------
DNA (3015bp)
protein (1005aa)
Protein translocase subunit SecA n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XNS3_9BACT id=5225841 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
secA; preprotein translocase subunit SecA
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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33751..34224
-----------------
DNA (474bp)
protein (158aa)
alias=16ft_combo_ws3_scaffold_92_64 id=24532855 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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34250..36757
-----------------
DNA (2508bp)
protein (836aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LR99_HALO1 id=5225839 bin=16ft_combo_ws3_JS1 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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36750..37640
-----------------
DNA (891bp)
protein (297aa)
Tyrosine recombinase XerC n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CIQ2_DESK7 id=5225838 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
xerC; site-specific tyrosine recombinase XerC
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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37660..38643
-----------------
DNA (984bp)
protein (328aa)
Putative uncharacterized protein id=24560788 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_65_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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38658..39452
-----------------
DNA (795bp)
protein (265aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NP11_9DELT id=5225836 bin=16ft_combo_ws3_JS1 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 33 in total

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