ggKbase home page

SCN18_10_11_15_R1_B_scaffold_3054_8

Organism: SCN18_10_11_15_R1_B_SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39-mega_65_7

partial RP 31 / 55 MC: 4 BSCG 34 / 51 MC: 14 ASCG 11 / 38 MC: 2
Location: 3854..4402

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F197_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.3
  • Coverage: 182.0
  • Bit_score: 334
  • Evalue 6.70e-89
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.8
  • Coverage: 181.0
  • Bit_score: 334
  • Evalue 9.50e-89
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 92.8
  • Coverage: 180.0
  • Bit_score: 332
  • Evalue 4.30e-89

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGGCCGTTTCGCAGGGCTTCAAGACCGATCTGCTCGGTTCGATCCCGTCGTTGCGCGCTTTCGCCGTCTCGCTGGCGCAGAACGCCGACAAGGCCGACGATCTCGTTCAGGAAACGCTGGTCAGGGCATGGGACAAGCATGCCTCGTTCCAGCCCGGCACCAATCTCAAGGCCTGGCTGTTCACCATCCTGCGCAACGAGTTCTATTCGCAGATGCGCAAGCGCGGCCGCGAGGTGCAGGACAGCGACGGCATCATGACGGCCAAGCTCGCCGTTCATCCGGCCCAGCACGGGCAGCTCGACCTGAAGGATTTCCGCACCGCGCTGGAGCAGCTTCCGGAAGACCAGCGCGAGGCGATCATCCTGATCGGCGCCTCCGGCTTTTCCTACGAGGAGGCGGCCGAGATCTGCGGTTGTGCGGTCGGCACCATCAAGAGCCGTGTCTCGCGCGCCCGCGCCAAGTTGCAGGAAATCCTGAAAATCACCGGCGAGGACGACTATGGTCCCGATGCCATCTCCACCCAGGTGATGGGCAAGCCCGCCGCCTGA
PROTEIN sequence
Length: 183
MAVSQGFKTDLLGSIPSLRAFAVSLAQNADKADDLVQETLVRAWDKHASFQPGTNLKAWLFTILRNEFYSQMRKRGREVQDSDGIMTAKLAVHPAQHGQLDLKDFRTALEQLPEDQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARAKLQEILKITGEDDYGPDAISTQVMGKPAA*