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SCN18_25_8_15_R4_B_scaffold_117

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Displaying items 31-60 of 187 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_117_30
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27032..27709)
DNA (678bp) protein (226aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:CEM56688.1}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:CEM56688.1};; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
Ribulose-phosphate 3-epimerase n=2 Tax=Xanthomonas campestris RepID=G0CJ48_XANCA
rpe; ribulose-phosphate 3-epimerase
SCN18_25_8_15_R4_B_scaffold_117_31
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27712..28086)
DNA (375bp) protein (125aa)
membrane protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003702A81
heat shock protein DnaJ domain-containing protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCN18_25_8_15_R4_B_scaffold_117_32
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28159..29055
DNA (897bp) protein (299aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWC9_PSEUU
SCN18_25_8_15_R4_B_scaffold_117_33
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29096..30289)
DNA (1194bp) protein (398aa)
sodium:proton antiporter n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B650D2
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Na+/H+ antiporter NhaA
SCN18_25_8_15_R4_B_scaffold_117_34
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30410..31144
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0C923_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KGM55079.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_117_35
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31155..32450)
DNA (1296bp) protein (432aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hmgA; homogentisate 1,2-dioxygenase (EC:1.13.11.5)
homogentisate 1,2-dioxygenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D41640
SCN18_25_8_15_R4_B_scaffold_117_36
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32571..33656)
DNA (1086bp) protein (362aa)
Probable 4-hydroxyphenylpyruvate dioxygenase protein id=2773062 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
4-hydroxyphenylpyruvate dioxygenase
Tax=GWF1_Xanthomonadales_69_6_curated
SCN18_25_8_15_R4_B_scaffold_117_37
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33733..34200
DNA (468bp) protein (156aa)
MarR family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B33CDD
MarR family transcriptional regulator
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_117_38
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34288..35820)
DNA (1533bp) protein (511aa)
Amino acid/peptide transporter n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVS8_PSEUU
Dihydroorotate dehydrogenase {ECO:0000313|EMBL:KFN50236.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
amino acid/peptide transporter
SCN18_25_8_15_R4_B_scaffold_117_39
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35960..36838)
DNA (879bp) protein (293aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
tryptophan 2,3-dioxygenase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003613F35
tryptophan 2,3-dioxygenase
SCN18_25_8_15_R4_B_scaffold_117_40
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36974..38050
DNA (1077bp) protein (359aa)
pdhA; branched-chain alpha-keto acid dehydrogenase, E1 component subunit alpha (EC:1.2.4.4)
ABC transporter permease n=1 Tax=Pseudomonas geniculata RepID=UPI00029A3700
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_117_41
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38047..39048
DNA (1002bp) protein (334aa)
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B36717
2-oxoisovalerate dehydrogenase {ECO:0000313|EMBL:KGM52902.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
transketolase central region
SCN18_25_8_15_R4_B_scaffold_117_42
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39060..40391
DNA (1332bp) protein (444aa)
Catalytic domain-containing protein of components of various dehydrogenase complexes n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVT2_PSEUU
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:KGM55072.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_117_43
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40436..40825
DNA (390bp) protein (130aa)
glyoxalase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003016A81
Glyoxalase {ECO:0000313|EMBL:KGM55068.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_117_44
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40889..41362)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00037F1DC4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ90102.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
SCN18_25_8_15_R4_B_scaffold_117_45
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41575..42891)
DNA (1317bp) protein (439aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
tryptophan--tRNA ligase (EC:6.1.1.2)
tryptophanyl-tRNA synthetase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00036AEB49
SCN18_25_8_15_R4_B_scaffold_117_46
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43016..43147)
DNA (132bp) protein (44aa)
Entericidin EcnAB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCN18_25_8_15_R4_B_scaffold_117_47
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43236..43388)
DNA (153bp) protein (51aa)
entericidin n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003157DB2
Entericidin {ECO:0000313|EMBL:KGM55062.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
entericidin EcnAB
SCN18_25_8_15_R4_B_scaffold_117_48
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43549..44472)
DNA (924bp) protein (308aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
arginase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002ED8A66
argI; probable arginase
SCN18_25_8_15_R4_B_scaffold_117_trna_3
unknown

Not on your lists

comp(44527..44599)
DNA (73bp)
transferRNA Thr
SCN18_25_8_15_R4_B_scaffold_117_49
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44648..45343)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWU6_PSEUP
Sporulation domain protein {ECO:0000313|EMBL:KGQ17858.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_117_50
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45353..46072)
DNA (720bp) protein (240aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Type III pantothenate kinase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVU2_PSEUU
Baf family transcriptional regulator
SCN18_25_8_15_R4_B_scaffold_117_51
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46069..47058)
DNA (990bp) protein (330aa)
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWU8_PSEUP
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin operon repressor {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor
SCN18_25_8_15_R4_B_scaffold_117_52
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47055..47669)
DNA (615bp) protein (205aa)
plsY; glycerol-3-phosphate acyltransferase (EC:2.3.1.-)
Glycerol-3-phosphate acyltransferase id=2637857 bin=GWF1_Xanthomonadales_69_6 species=uncultured bacterium ws085G8 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_117_53
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47736..49562)
DNA (1827bp) protein (609aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5B24F
Uncharacterized protein {ECO:0000313|EMBL:KGM53675.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
degV family protein
SCN18_25_8_15_R4_B_scaffold_117_54
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49690..49992
DNA (303bp) protein (101aa)
SCN18_25_8_15_R4_B_scaffold_117_55
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50006..50767
DNA (762bp) protein (254aa)
zinc-dependent peptidase (M family) n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003727E51
Uncharacterized protein {ECO:0000313|EMBL:AKC88349.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_117_56
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50777..52219)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWV1_PSEUP
integral membrane sensor signal transduction histidine kinase
SCN18_25_8_15_R4_B_scaffold_117_57
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52251..52934)
DNA (684bp) protein (228aa)
Two-component system regulatory protein n=23 Tax=Xanthomonas RepID=B0RXW3_XANCB
Transcriptional regulator {ECO:0000313|EMBL:EYR68431.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
SCN18_25_8_15_R4_B_scaffold_117_58
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53011..53385)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TF96_STEMA
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
Displaying items 31-60 of 187 in total

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