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SCN18_25_8_15_R4_B_scaffold_117_94

Organism: SCN18_25_8_15_R4_B_Xanthomonadales_70_612

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 90717..91583

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=2 Tax=Stenotrophomonas maltophilia RepID=B4SL96_STRM5 similarity UNIREF
DB: UNIREF100
  • Identity: 82.2
  • Coverage: 287.0
  • Bit_score: 472
  • Evalue 1.90e-130
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.6
  • Coverage: 287.0
  • Bit_score: 481
  • Evalue 5.80e-133
RNA polymerase factor sigma-32 similarity KEGG
DB: KEGG
  • Identity: 81.6
  • Coverage: 288.0
  • Bit_score: 474
  • Evalue 1.90e-131

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 867
ATGACGTCCGCCGCACTCGTCGCCCACAACCTGCCGATCCCCAGCGCCATGGGTTCGCTGGAGGCGTACATCGGTGCCGTGCACCAGATCCCGGTGCTGTCCGCCGAGGAGGAGCAGCGGCTGGCCCTGCGCCTGCGTGAGCACAACGACATCGCCGCCGCGCAGGAGCTGATCCTGTCGCATCTGCGCTTCGTGGTGCACGTGGCCCGCGGCTATGCCGGCTACGGCCTGCCGCTGGGCGATCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTCAAGCGCTTCGACCCCGCGGTCGGCGTGCGCCTGGTCAGCTTCGCGGTGCACTGGATCCGTGCCGAGATGCACGACTTCATCATCAAGAACTGGCGGATCGTGAAGGTCGCCACCACCAAGGCGCAGCGCAAGCTGTTCTTCAACCTGCGCAAGAGCAAGACCCGCCTGGGCTGGATGAACGCCGAGGAAGTGCGCGCGGTGGCCCGCGACCTCAACGTCTCCGAGCACGAGGTGCTGGAAATGGAGGCGCGCCTGTCCGGTCGCGACATCGGCTTCGACGCGCCCGACGACGGCGACGACGAGCACGCCCCGCCGGCGCCGGCGAACTACCTGGTGGCGCACGAGGCCGACCCCGCCGCCGCCTACGAATCCGCCGACAGCGAGGCCGACCAGCTGGAAGTCCTGCGCGAGGGCATGGCCCGGCTCGACGCCCGTTCGCGCGACATCATCAAGCGCCGCTGGCTGGATCCGGACAGCAAGGTGACCCTGCAGGAACTGGCCGACGAGTACGGCGTCTCTGCCGAGCGCATCCGCCAGATCGAGGCCAACGCGCTGAAGAAAATGAAGGCGCTGTTCGCGGCGTAA
PROTEIN sequence
Length: 289
MTSAALVAHNLPIPSAMGSLEAYIGAVHQIPVLSAEEEQRLALRLREHNDIAAAQELILSHLRFVVHVARGYAGYGLPLGDLIQEGNIGLMKAVKRFDPAVGVRLVSFAVHWIRAEMHDFIIKNWRIVKVATTKAQRKLFFNLRKSKTRLGWMNAEEVRAVARDLNVSEHEVLEMEARLSGRDIGFDAPDDGDDEHAPPAPANYLVAHEADPAAAYESADSEADQLEVLREGMARLDARSRDIIKRRWLDPDSKVTLQELADEYGVSAERIRQIEANALKKMKALFAA*