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SCN18_25_8_15_R4_B_scaffold_273_27

Organism: SCN18_25_8_15_R4_B_Xanthomonadales_70_612

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 13211..14209

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:KIJ72376.1}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:KIJ72376.1};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.8
  • Coverage: 332.0
  • Bit_score: 590
  • Evalue 1.30e-165
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 90.4
  • Coverage: 332.0
  • Bit_score: 586
  • Evalue 3.00e-165
DNA-directed RNA polymerase subunit alpha n=12 Tax=Stenotrophomonas RepID=RPOA_STRMK similarity UNIREF
DB: UNIREF100
  • Identity: 90.4
  • Coverage: 332.0
  • Bit_score: 586
  • Evalue 1.10e-164

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 999
ATGACGGTTACCGCCACCCAAGTCCTGCGTCCGCGCGGACCGCAGATCGAGCGCATCACCGACACCCGCGCCAAGGTCGTGATCGAACCTTTGGAGCGCGGCTACGGCCACACCCTCGGCAACGCGCTGCGCCGCGTGCTGCTCTCGTCGATCCCGGGCTTCGCCATCACCGAGGTCGAGATCGACGGCGTGCTGCACGAGTACACCACGGTCGAAGGCCTGCAGGAGGACGTGCTCGAGGTCCTGCTGAACCTCAAGGACGTCGCCATCCGCATGCATAGCGGCGACACCGATACCCTGGAGCTGAAGAAGCAGGGTCCGGGCGTCGTCACCGCCGGTGACATCAAGACCACCCACAACGTGGAAGTGCTCAACCCCGGCCACGTGATCGCCACCCTGACCAAGGACGTGGCGCTCAACATCCGCCTGACCATCAGTCGCGGCTTCGGCTACCAGCCGGCCGCCGCCCGCCGTCGCCCCGACGACGAGGCGCGCACGATCGGCCGCCTGGTGCTGGACGCCTCGTTCTCGCCGGTCCGCCGCGTGGCCTACGCGGTGGAAGCCGCGCGCGTCGAGCAGCGTACCGACCTCGACAAGCTGGTGCTGGACATCGAGACCAACGGCACGATCGATGCCGAAGAGGCCGTGCGCACCGCCGCCGACATCCTCACCGACCAGCTGTCGGTGTTCGGCGATTTCACCCACCGCGAGCGCGGCGCCAAGCCGCAGGCCAGCGCCGGCGTCGACCCGCTGCTGCTGCGCCCGATCGACGACCTCGAGCTGACCGTGCGTTCGGCCAACTGCCTGAAGGCCGAGAGCATCTACTACATCGGCGATCTGATCCAGAAGACCGAGGTGGAGCTGCTCAAGACCCCGAACCTGGGCAAGAAGTCGCTCACCGAGATCAAGGAAGTCCTCGCACAGCGCGGCCTGTCGCTGGGCATGAAGCTGGAGAACTGGCCGCCGGCCGGTGCCGCTTCGCACGGCATGCTCGGCTGA
PROTEIN sequence
Length: 333
MTVTATQVLRPRGPQIERITDTRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEIDGVLHEYTTVEGLQEDVLEVLLNLKDVAIRMHSGDTDTLELKKQGPGVVTAGDIKTTHNVEVLNPGHVIATLTKDVALNIRLTISRGFGYQPAAARRRPDDEARTIGRLVLDASFSPVRRVAYAVEAARVEQRTDLDKLVLDIETNGTIDAEEAVRTAADILTDQLSVFGDFTHRERGAKPQASAGVDPLLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLTEIKEVLAQRGLSLGMKLENWPPAGAASHGMLG*