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SCN18_25_8_15_R4_B_scaffold_195_81

Organism: SCN18_25_8_15_R4_B_Xanthomonadales_70_612

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 94076..94375

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.9
  • Coverage: 99.0
  • Bit_score: 173
  • Evalue 8.90e-41
DNA-directed RNA polymerase subunit omega n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UT90_PSEUP similarity UNIREF
DB: UNIREF100
  • Identity: 82.8
  • Coverage: 99.0
  • Bit_score: 154
  • Evalue 3.10e-35
rpoZ; DNA-directed RNA polymerase subunit omega similarity KEGG
DB: KEGG
  • Identity: 82.8
  • Coverage: 99.0
  • Bit_score: 154
  • Evalue 8.60e-36

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 300
ATGGCCCGGATTACCGTCGAAGACTGCCTGCAGGTGGTCGATAACCGCTTCGAACTCGTGATGATGGCGGCCAAGCGCGCGCGCCAGCTGGCCACCGGCGTGGAGCCGAAGCTGGACAACAGCGAGGCCCAGGACAAGCCGACCGTGCTGGCGCTGCGCGAGATCGCCGCGCGCGCGATCGACACCCAGTACATCGACGCGGTCGAGAAGGCCGAGCGCGAGCGCAAGGAGCGCGAGGCGCTGGAGTGGGCGGCGGCCGAGGTGGTGGCCGGCGACGACGACATGAAGGGCGACGACTGA
PROTEIN sequence
Length: 100
MARITVEDCLQVVDNRFELVMMAAKRARQLATGVEPKLDNSEAQDKPTVLALREIAARAIDTQYIDAVEKAERERKEREALEWAAAEVVAGDDDMKGDD*