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GD18-4_B1_scaffold_413108

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_413108_1
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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241..885
-----------------
DNA (645bp)
protein (215aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J9M9_ANAD2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL67417.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
GD18-4_B1_scaffold_413108_2
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(946..2238)
-----------------
DNA (1293bp)
protein (431aa)
Retron-type RNA-directed DNA polymerase protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SQ47_9DELT
Retron-type RNA-directed DNA polymerase protein {ECO:0000313|EMBL:ERK90765.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
hypothetical protein
GD18-4_B1_scaffold_413108_3
R_OD1_52_25, Parcubacteria, Bacteria

Not on your lists

2603..2923
-----------------
DNA (321bp)
protein (107aa)
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] id=18248206 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
transcriptional coactivator/pterin dehydratase
Tax=RIFCSPLOWO2_01_FULL_OD1_52_25_curated
GD18-4_B1_scaffold_413108_4
unknown

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2984..3382
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

GD18-4_B1_scaffold_413108_5
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3432..5126)
-----------------
DNA (1695bp)
protein (565aa)
FAD binding domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F896_9DELT
FAD linked oxidase domain-containing protein
Tax=BJP_IG2069_Syntrophobacterales_46_30
GD18-4_B1_scaffold_413108_6
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

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comp(5162..6817)
-----------------
DNA (1656bp)
protein (552aa)
Glycerol-3-phosphate dehydrogenase n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QLD0_DESB2
glycerol-3-phosphate dehydrogenase
Tax=RBG_16_Spirochaetes_49_21_curated
GD18-4_B1_scaffold_413108_7
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(6814..7572)
-----------------
DNA (759bp)
protein (253aa)
GntR family transcriptional regulator n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I7B5_9CLOT
GntR domain protein
Tax=BJP_IG2069_Spirochaetales_48_31
GD18-4_B1_scaffold_413108_8
unknown

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comp(7705..7827)
-----------------
DNA (123bp)
protein (41aa)

This feature has no annotations

GD18-4_B1_scaffold_413108_9
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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7863..8120
-----------------
DNA (258bp)
protein (86aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FNZ6_STIAD
Short-chain dehydrogenase {ECO:0000313|EMBL:KFA89564.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
short-chain dehydrogenase/reductase
GD18-4_B1_scaffold_413108_10
unknown

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comp(8136..8405)
-----------------
DNA (270bp)
protein (90aa)

This feature has no annotations

GD18-4_B1_scaffold_413108_11
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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8618..10822
-----------------
DNA (2205bp)
protein (735aa)
Molybdopterin oxidoreductase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSQ1_OPITP
molybdopterin oxidoreductase
Molybdopterin oxidoreductase {ECO:0000313|EMBL:ACB74750.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
GD18-4_B1_scaffold_413108_12
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

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10826..11395
-----------------
DNA (570bp)
protein (190aa)
4Fe-4S ferredoxin n=1 Tax=Flexithrix dorotheae RepID=UPI00036CE0B3
polysulfide reductase-like iron-sulfur protein
Tax=CG_Delta_07
GD18-4_B1_scaffold_413108_13
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

11403..12368
-----------------
DNA (966bp)
protein (322aa)
Polysulphide reductase NrfD n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHT8_ANADF
polysulfide reductase NrfD
Tax=BJP_IG2069_Spirochaetales_48_31
GD18-4_B1_scaffold_413108_14
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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12374..12934
-----------------
DNA (561bp)
protein (187aa)
Putative transporter component id=3430025 bin=GWA2_Ignavibacteriae_54_16_partial species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
hypothetical protein
Tax=GWA2_Ignavibacteria_54_16_curated
GD18-4_B1_scaffold_413108_15
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12931..13572
-----------------
DNA (642bp)
protein (214aa)
Rhodanese domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSP7_OPITP
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:ACB74746.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
GD18-4_B1_scaffold_413108_16
unknown

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13578..14171
-----------------
DNA (594bp)
protein (198aa)

This feature has no annotations

GD18-4_B1_scaffold_413108_17
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14273..15838
-----------------
DNA (1566bp)
protein (522aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSP6_OPITP
hypothetical protein
Tax=CG_Delta_07
GD18-4_B1_scaffold_413108_18
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15831..17186)
-----------------
DNA (1356bp)
protein (452aa)
Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHU4_ANADF
sigma-54 dependent trancsriptional regulator
Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABS28290.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
GD18-4_B1_scaffold_413108_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17494..19161
-----------------
DNA (1668bp)
protein (556aa)
periplasmic sensor signal transduction histidine kinase id=24479407 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
GD18-4_B1_scaffold_413108_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

19158..20513
-----------------
DNA (1356bp)
protein (452aa)
Response regulator n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AMC5_IGNAJ id=5224794 bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
response regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
GD18-4_B1_scaffold_413108_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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20510..21046
-----------------
DNA (537bp)
protein (179aa)
peptidase, zinc-dependent id=24479405 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase, zinc-dependent
Tax=RBG_16_RIF_WS3X_71_46_curated
GD18-4_B1_scaffold_413108_22
R_Deltaproteobacteria_50_16, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20989..22992)
-----------------
DNA (2004bp)
protein (668aa)
Cytochrome b subunit of formate dehydrogenase-like protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZU02_OPITP
cytochrome b subunit of formate dehydrogenase-like protein
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_50_16_curated
GD18-4_B1_scaffold_413108_23
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23018..24958)
-----------------
DNA (1941bp)
protein (647aa)
Cytochrome b subunit of formate dehydrogenase-like protein id=4709501 bin=GWC2_Deltaproteobacteria_66_88 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
cytochrome b subunit of formate dehydrogenase-like
Tax=GWA2_Deltaproteobacteria_65_63_curated
GD18-4_B1_scaffold_413108_24
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(24998..25738)
-----------------
DNA (741bp)
protein (247aa)
Glycine cleavage H-protein id=3650896 bin=GWA2_Ignavibacteriae_54_16_partial species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
glycine cleavage H-protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
GD18-4_B1_scaffold_413108_25
Smithella sp. F21, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26179..27423
-----------------
DNA (1245bp)
protein (415aa)
Acyl-CoA dehydrogenase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CER7_DESTA
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFN37800.1}; TaxID=1538640 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. F21.;"
acyl-CoA dehydrogenase
GD18-4_B1_scaffold_413108_26
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27719..27949
-----------------
DNA (231bp)
protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF05342.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
Displaying 26 items

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