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GD18-4_B1_scaffold_2120810

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_2120810_1
unknown

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comp(1..150)
-----------------
DNA (150bp)
protein (50aa)

This feature has no annotations

GD18-4_B1_scaffold_2120810_2
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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330..1406
-----------------
DNA (1077bp)
protein (359aa)
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XPA0_SORCE
isopentenyl-diphosphate delta-isomerase
Isopentenyl-diphosphate delta-isomerase, FMN-dependent {ECO:0000313|EMBL:AKF03660.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
GD18-4_B1_scaffold_2120810_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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1572..1943
-----------------
DNA (372bp)
protein (124aa)
Putative secreted protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FX14_SORC5
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:CAN95470.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_2120810_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2008..2979
-----------------
DNA (972bp)
protein (324aa)
Outer membrane lipoprotein omp16 {ECO:0000313|EMBL:EYF08758.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
Putative uncharacterized protein id=4899260 bin=GWA2_OP3_52_12 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
OmpA family protein
GD18-4_B1_scaffold_2120810_5
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3010..3438)
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XSZ8_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP35476.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_2120810_6
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(3532..4221)
-----------------
DNA (690bp)
protein (230aa)
two-component hybrid sensor and regulator (EC:2.7.3.-)
Putative PAS/PAC sensor protein id=3476113 bin=GWF2_Lentisphaerae_49_21 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
GD18-4_B1_scaffold_2120810_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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4386..5366
-----------------
DNA (981bp)
protein (327aa)
ilvE2; branched-chain-amino-acid transaminase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:CAN90410.1}; EC=2.6.1.42 {ECO:0000313|EMBL:CAN90410.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Branched-chain-amino-acid transaminase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GQ98_SORC5
GD18-4_B1_scaffold_2120810_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5524..6135
-----------------
DNA (612bp)
protein (204aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XTJ2_SORCE
Uncharacterized protein {ECO:0000313|EMBL:EYF05228.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
GD18-4_B1_scaffold_2120810_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6449..8338
-----------------
DNA (1890bp)
protein (630aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XUU9_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP35685.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_2120810_10
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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8677..10275
-----------------
DNA (1599bp)
protein (533aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XTZ4_SORCE
Uncharacterized protein {ECO:0000313|EMBL:EYF00783.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
GD18-4_B1_scaffold_2120810_11
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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10278..11171
-----------------
DNA (894bp)
protein (298aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9ER32_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF04473.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
GD18-4_B1_scaffold_2120810_12
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11268..12197)
-----------------
DNA (930bp)
protein (310aa)
Put. Polysaccharide deacetylase family protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIP1_SORC5
Polysaccharide deacetylase {ECO:0000313|EMBL:AKF05382.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
polysaccharide deacetylase
GD18-4_B1_scaffold_2120810_13
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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12261..13751
-----------------
DNA (1491bp)
protein (497aa)
Lysophospholipase {ECO:0000313|EMBL:AJR17985.1}; EC=3.1.1.5 {ECO:0000313|EMBL:AJR17985.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00036BB102
secretory lipase
GD18-4_B1_scaffold_2120810_14
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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13846..13995
-----------------
DNA (150bp)
protein (50aa)
50S ribosomal protein L34 n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=RL34_SORC5
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
GD18-4_B1_scaffold_2120810_15
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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14102..14401
-----------------
DNA (300bp)
protein (100aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
Putative ribonuclease P protein component n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G6E2_SORC5
ribonuclease P protein component
GD18-4_B1_scaffold_2120810_16
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14398..14691
-----------------
DNA (294bp)
protein (98aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4Y121_PSEMY
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
GD18-4_B1_scaffold_2120810_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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14710..16527
-----------------
DNA (1818bp)
protein (606aa)
Membrane protein insertase YidC n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XRB1_SORCE
hypothetical protein
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_2120810_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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16593..17147
-----------------
DNA (555bp)
protein (185aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XTN0_SORCE
hypothetical protein
RNA-binding protein {ECO:0000313|EMBL:CAN92677.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_2120810_19
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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17218..18171
-----------------
DNA (954bp)
protein (318aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XKR3_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33772.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_2120810_20
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(18350..18814)
-----------------
DNA (465bp)
protein (155aa)
Transposase IS200-family protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NJ93_ROSCS
transposase IS200-family protein
Transposase IS200-family protein {ECO:0000313|EMBL:ABU57563.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Displaying 20 items

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